VARS2 (valyl-tRNA synthetase 2, mitochondrial)

symbol:
VARS2
locus group:
protein-coding gene
location:
6p21.33
gene_family:
Aminoacyl tRNA synthetases, Class I
alias symbol:
DKFZP434L1435|KIAA1885|G7a
alias name:
valine tRNA ligase 2, mitochondrial
entrez id:
57176
ensembl gene id:
ENSG00000137411
ucsc gene id:
uc003nsc.3
refseq accession:
NM_020442
hgnc_id:
HGNC:21642
approved reserved:
2003-07-02
6p21.33
基因染色体位置图

VARS2(Valyl-tRNA Synthetase 2)是一种线粒体氨基酰-tRNA合成酶,属于I类氨基酰-tRNA合成酶家族。它的主要功能是在线粒体内催化缬氨酸(valine)与其对应的tRNA(tRNA^Val)结合,形成缬氨酰-tRNA^Val,这一过程对线粒体蛋白质的翻译至关重要。VARS2基因位于6号染色体(6p21.1),其表达产物定位于线粒体基质,参与线粒体DNA编码蛋白的合成,从而影响线粒体的氧化磷酸化功能和能量代谢。VARS2基因突变会导致线粒体功能障碍,与多种严重的线粒体疾病相关,如进行性脑病、癫痫、发育迟缓、心肌病和乳酸酸中毒等。这些疾病通常表现为多系统受累,尤其是神经系统和肌肉组织。VARS2突变可能影响其酶活性或稳定性,导致tRNA^Val的氨酰化缺陷,进而损害线粒体蛋白质合成和呼吸链复合体的组装。VARS2过表达可能对线粒体功能产生保护作用,但具体机制尚不明确;而表达降低或功能缺失会严重影响线粒体能量代谢,导致细胞凋亡或组织功能障碍。VARS2属于氨基酰-tRNA合成酶(aaRS)基因家族,该家族成员负责将特定氨基酸连接到对应的tRNA上,确保翻译的准确性。线粒体aaRS(如VARS2)与细胞质aaRS在功能上相似,但前者专门服务于线粒体基因组。该家族基因突变常引起神经退行性疾病或代谢紊乱,突显其在细胞能量稳态中的核心作用。研究VARS2有助于理解线粒体疾病的分子机制,并为相关治疗策略提供潜在靶点。

This gene encodes a mitochondrial aminoacyl-tRNA synthetase, which catalyzes the attachment of valine to tRNA(Val) for mitochondrial translation. Mutations in this gene cause combined oxidative phosphorylation deficiency-20, and are also associated with early-onset mitochondrial encephalopathies. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Aug 2014]

这个基因编码线粒体氨酰tRNA合成,其催化缬氨酸到的tRNA(VAL)为线粒体翻译附件。在该基因导致结合的氧化磷酸化不足-20的突变,并且也与早发性线粒体脑病相关联。这个基因的选择性剪接的结果在多个转录变体。 [由RefSeq的,2014年8月提供]

VARS2基因的碱基序列:[NCBI]
Loading Gene Browser...
VARS2基因的碱基突变:           仅显示部分snp
rs1132408       rs1132408       rs1132408       rs1132408       rs1132408       rs1132408       rs1264305       rs1264305       rs1264305       rs1264305       rs1264305       rs1264305       rs1264306       rs1264306       rs1264306       rs1264306       rs1264306      

VARS2基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TAAGATCAGCCATCTCGGAC
59
TACCACAACCTCTGCATCAG
60
ACCTTGCTCGTTTCTACCC
60
GGATGAAGAAGCACCTTGC
59
GAGATTCACACTCTGCTCC
58
CCTCAGAGACTGACAGGTG
59
CTTCAGCAAGTATGGAGGC
58
CATGGGATGAAGAAGCACC
59
TTACCATGGATGTTGGCTC
58
TTGACAAGCTGATGGTTCC
58
TAAGATCAGCCATCTCGGAC
59
TACCACAACCTCTGCATCAG
60
TGATGCTCAAACAGACACCT
60
GGAGTCTGTCCCTTTCCAG
59
AAAGAAAGATGTCTCTGGGC
57
CTGGTTTGAAGAAGCCCTC
58
CATGGATCTCCCATCTCCC
59
ATTCTGCAGGTGACTTGCT
60
TCCTTCCACCAGAAGAACTG
59
CAACAGTCCTCTTCTCCCTG
59
      尚未收录相关数据

VARS2基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

VARS2基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0002161
A0A0A0MTG1 (UniProtKB)
IEA
GO:0004832
A0A0A0MTG1 (UniProtKB)
IEA
GO:0005524
A0A0A0MTG1 (UniProtKB)
IEA
GO:0006438
A0A0A0MTG1 (UniProtKB)
IEA
GO:0006450
A0A0A0MTG1 (UniProtKB)
IEA
GO:0002161
A0A0G2JIA5 (UniProtKB)
IEA
GO:0004832
A0A0G2JIA5 (UniProtKB)
IEA
GO:0005524
A0A0G2JIA5 (UniProtKB)
IEA
GO:0006438
A0A0G2JIA5 (UniProtKB)
IEA
GO:0006450
A0A0G2JIA5 (UniProtKB)
IEA
GO:0002161
A0A0G2JL52 (UniProtKB)
IEA
GO:0004832
A0A0G2JL52 (UniProtKB)
IEA
GO:0005524
A0A0G2JL52 (UniProtKB)
IEA
GO:0006438
A0A0G2JL52 (UniProtKB)
IEA
GO:0006450
A0A0G2JL52 (UniProtKB)
IEA
GO:0002161
A0A140T8Y0 (UniProtKB)
IEA
GO:0004832
A0A140T8Y0 (UniProtKB)
IEA
GO:0005524
A0A140T8Y0 (UniProtKB)
IEA
GO:0006438
A0A140T8Y0 (UniProtKB)
IEA
GO:0006450
A0A140T8Y0 (UniProtKB)
IEA
GO:0002161
A0A140TA35 (UniProtKB)
IEA
GO:0004832
A0A140TA35 (UniProtKB)
IEA
GO:0005524
A0A140TA35 (UniProtKB)
IEA
GO:0006438
A0A140TA35 (UniProtKB)
IEA
GO:0006450
A0A140TA35 (UniProtKB)
IEA
GO:0002161
A0A140TA36 (UniProtKB)
IEA
GO:0004832
A0A140TA36 (UniProtKB)
IEA
GO:0005524
A0A140TA36 (UniProtKB)
IEA
GO:0006438
A0A140TA36 (UniProtKB)
IEA
GO:0006450
A0A140TA36 (UniProtKB)
IEA
GO:0002161
A0A140TA40 (UniProtKB)
IEA
GO:0004832
A0A140TA40 (UniProtKB)
IEA
GO:0005524
A0A140TA40 (UniProtKB)
IEA
GO:0006438
A0A140TA40 (UniProtKB)
IEA
GO:0006450
A0A140TA40 (UniProtKB)
IEA
GO:0002161
A0A140TA45 (UniProtKB)
IEA
GO:0004832
A0A140TA45 (UniProtKB)
IEA
GO:0005524
A0A140TA45 (UniProtKB)
IEA
GO:0006438
A0A140TA45 (UniProtKB)
IEA
GO:0006450
A0A140TA45 (UniProtKB)
IEA
GO:0002161
B4E0K6 (UniProtKB)
IEA
GO:0004832
B4E0K6 (UniProtKB)
IEA
GO:0005524
B4E0K6 (UniProtKB)
IEA
GO:0006438
B4E0K6 (UniProtKB)
IEA
GO:0006450
B4E0K6 (UniProtKB)
IEA
GO:0004812
B7ZCJ6 (UniProtKB)
IEA
GO:0005524
B7ZCJ6 (UniProtKB)
IEA
GO:0006418
B7ZCJ6 (UniProtKB)
IEA
GO:0002161
B7ZL25 (UniProtKB)
IEA
GO:0004832
B7ZL25 (UniProtKB)
IEA
GO:0005524
B7ZL25 (UniProtKB)
IEA
GO:0006438
B7ZL25 (UniProtKB)
IEA
GO:0006450
B7ZL25 (UniProtKB)
IEA
GO:0002161
Q5ST30 (UniProtKB)
IEA
GO:0004832
Q5ST30 (UniProtKB)
IBA
GO:0005515
Q5ST30 (UniProtKB)
IPI
GO:0005515
Q5ST30 (UniProtKB)
IPI
GO:0005515
Q5ST30 (UniProtKB)
IPI
GO:0005515
Q5ST30 (UniProtKB)
IPI
GO:0005515
Q5ST30 (UniProtKB)
IPI
GO:0005524
Q5ST30 (UniProtKB)
IEA
GO:0005739
Q5ST30 (UniProtKB)
IEA
GO:0006438
Q5ST30 (UniProtKB)
IBA
GO:0006450
Q5ST30 (UniProtKB)
IEA
GO:0005829
Q5ST30 (UniProtKB)
IBA

可能调控 VARS2基因的相关microRNA:     

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20 0.24 2 0 ORPHANET_UNIPROT
Lupus Erythematosus, Systemic 0.004734064 2 1 GAD
Behcet Syndrome 0.002367032 1 12 GAD
Epilepsy 0.000271442 1 0 BeFree
Mitochondrial Encephalomyopathies 0.000271442 1 0 BeFree
Mitochondrial Diseases 0.000271442 1 0 BeFree
Microcephaly 0.000271442 1 0 BeFree
Muscle hypotonia 0.000271442 1 0 BeFree

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