TSIX (TSIX transcript, XIST antisense RNA)

symbol:
TSIX
locus group:
non-coding RNA
location:
Xq13.2
gene_family:
Long non-coding RNAs (published)
alias symbol:
NCRNA00013|XIST-AS1|LINC00013
alias name:
XIST antisense RNA (non-protein co…
entrez id:
9383
ensembl gene id:
ENSG00000270641
ucsc gene id:
uc004ebn.2
refseq accession:
NR_003255
hgnc_id:
HGNC:12377
approved reserved:
1999-09-28
Xq13.2
基因染色体位置图

In mammals, dosage compensation of genes on the X chromosome occurs by X inactivation, which is regulated in cis by the X-inactivation center (XIC) and expression of the XIST non-coding RNA. This gene expresses a non-coding antisense transcript across the 3' end of the XIST locus, and is coexpressed with XIST only from the inactive X chromosome. The mouse ortholog of this locus is required for imprinted X inactivation in extraembryonic tissues and silences Xist through modification of the chromatin structure in the Xist promoter region. In contrast, imprinted X inactivation does not occur in human extraembryonic tissues and transcripts from this locus do not repress XIST expression or affect random X chromosome inactivation in embryonic cells. This transcript is thought to be unspliced and extend over more than 30 kb, but its exact nature has not been determined. [provided by RefSeq, Jul 2008]

在哺乳动物中,在X染色体上的基因的剂量补偿由X染色体失活,这是在顺式由X染色体失活中心(XIC)和表达的XIST非编码RNA的调节发生。该基因表达横跨XIST轨迹的3‘端的非编码的反义转录物,并且共表达与只从失活的X染色体XIST。该位点的小鼠直向同源物时需要在胚外组织印迹X染色体失活,并通过在Xist基因启动子区的染色质结构的修饰沉默Xist的。相比之下,印X染色体失活并没有在人类胚外组织和成绩单从这个位点发生不压制XIST表达或胚胎细胞影响的随机X染色体失活。这份成绩单被认为是未拼接并延伸超过30 KB,但其确切性质尚未确定。 [由RefSeq的,2008年7月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
TSIX基因的碱基突变:           仅显示部分snp
rs12502       rs798615       rs798616       rs798617       rs798618       rs798619       rs798621       rs1057464       rs1076875       rs1088590       rs1088591       rs1088592       rs1088593       rs1088594       rs1137201       rs1137202       rs1137203      

TSIX基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
AATGAGATTGATAGTGTGGTGG
58
CCTGTTCTTATGCGACCCT
60
GAATGAGATTGATAGTGTGGTGG
59
CTGTTCTTATGCGACCCTC
58
ACATCCTATAATGCCAAACCTG
59
AGTAAAGTCCCTCTCCTTAAAGTC
60
转录因子
影响基因
影响类型
参考文献链接(PubMed)
YY1
TSIX
Unknown

TSIX基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

TSIX基因的本体(GO)信息:

可能调控 TSIX基因的相关microRNA:     

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源

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