SYNE1 (spectrin repeat containing nuclear envelope protein 1)

symbol:
SYNE1
locus group:
protein-coding gene
location:
6q25.2
gene_family:
alias symbol:
SYNE-1B|KIAA0796|8B|Nesprin-1|enaptin|MYNE1|CPG2|dJ45H2.2|SCAR8|ARCA1|Nesp1
alias name:
myocyte nuclear envelope protein 1…
entrez id:
23345
ensembl gene id:
ENSG00000131018
ucsc gene id:
uc003qou.4
refseq accession:
NM_182961
hgnc_id:
HGNC:17089
approved reserved:
2003-02-19
6q25.2
基因染色体位置图

SYNE1(Spectrin Repeat Containing Nuclear Envelope Protein 1)是一种编码核膜蛋白的基因,属于nesprin(核膜骨架蛋白)基因家族。该家族成员共同特点是含有多个血影蛋白重复序列(spectrin repeats),这些结构帮助蛋白质形成弹性支架,维持细胞核形态并参与核膜与细胞骨架的连接。SYNE1编码的蛋白主要分布在核膜外层,通过与核纤层蛋白(lamin)和细胞质中的肌动蛋白(actin)相互作用,稳定细胞核结构并参与细胞核定位、机械力传导等过程。其表达产物在肌肉和神经组织中尤为丰富,对维持神经元和肌细胞的正常功能至关重要。SYNE1突变可导致常染色体隐性小脑性共济失调(autosomal recessive cerebellar ataxia type 1,ARCA1)和埃默里-德赖富斯肌营养不良(Emery-Dreifuss muscular dystrophy),表现为运动协调障碍、肌肉萎缩和关节挛缩。突变通常破坏蛋白与核膜或细胞骨架的连接能力,导致细胞核形态异常和机械敏感性下降。过表达SYNE1可能干扰核质运输并诱发细胞凋亡,而表达降低则会导致核膜脆性增加,影响神经元迁移和肌肉收缩功能。该基因还与心肌病和听力损失相关,其单核苷酸多态性(SNP)可能增加精神分裂症风险。nesprin家族其他成员(如SYNE2)也参与类似功能,但组织分布和结合伙伴存在差异。研究SYNE1有助于理解神经退行性疾病和肌营养不良的发病机制,并为基因治疗提供靶点。专业术语解释:血影蛋白重复序列(spectrin repeats)是约106个氨基酸组成的螺旋结构单元,介导蛋白质相互作用;核纤层蛋白(lamin)是核膜内侧的网状结构蛋白,维持核完整性;常染色体隐性指两个等位基因均突变才致病的遗传模式。

This gene encodes a spectrin repeat containing protein expressed in skeletal and smooth muscle, and peripheral blood lymphocytes, that localizes to the nuclear membrane. Mutations in this gene have been associated with autosomal recessive spinocerebellar ataxia 8, also referred to as autosomal recessive cerebellar ataxia type 1 or recessive ataxia of Beauce. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

该基因编码含有在骨骼肌和平滑肌表达的蛋白质,和外周血淋巴细胞一个血影重复,即定位于核膜。在这种基因突变与常染色体隐性遗传脊髓小脑性共济失调8,也被称为常染色体隐性遗传小脑性共济失调1型或博斯隐性共济失调相关联。编码不同同种型的可变剪接转录物变体已有描述。 [由RefSeq的,2008年7月提供]

SYNE1基因的碱基序列:[NCBI]
Loading Gene Browser...
SYNE1基因的碱基突变:           仅显示部分snp
rs214957       rs214958       rs214959       rs926695       rs4870104       rs4870105       rs6908426       rs6936032       rs6937946       rs7751175       rs9479306       rs9918471       rs13220008       rs60570727       rs61472249       rs75060719       rs75205420      

SYNE1基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
GTAACATCATGCAGGAAGCT
58
CTCCTTCTATCAGTTGCTGG
58
ACTGCCAGAATATGCTGGT
59
GCAGCAGGTTCTCATTGTG
60
GCAGGACGTCACTTTAAAGG
59
CATCATTGCCTTTCCTATGCT
59
GGGAAAGAACTAAATCGAAGAC
57
CTTCAGCTTTGACTTTAACCTG
58
CCATGAAATCTACCGGACCA
60
AAATGAAACCTCTCGGCCA
60
GCTCAATGATTTCCATGCTG
58
CTAACAGTTCAGACACCTCC
58
ACAATATGAGGTGACATACCAG
57
TTCTCAGCTTCTTCCACTG
57
AGAATGTGATCAGTGAGAAGC
58
TAGAGATGGACTGGAGGGA
58
CCTATGTAGCCCAGTTTCTG
58
ACTCTGTCTTCTCTATCATCCT
58
GTCACAAGGGTGAAGAAGC
59
TAGACTATTGGCTTGGCCA
58
      尚未收录相关数据

SYNE1基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

SYNE1基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0034993
A0A087WYJ5 (UniProtKB)
IEA
GO:0051015
A0A087WYJ5 (UniProtKB)
IEA
GO:0090286
A0A087WYJ5 (UniProtKB)
IEA
GO:0016021
A0A0C4DG40 (UniProtKB)
IEA
GO:0034993
A0A0C4DG40 (UniProtKB)
IEA
GO:0051015
A0A0C4DG40 (UniProtKB)
IEA
GO:0090286
A0A0C4DG40 (UniProtKB)
IEA
GO:0016021
E7ENN3 (UniProtKB)
IEA
GO:0034993
E7ENN3 (UniProtKB)
IEA
GO:0051015
E7ENN3 (UniProtKB)
IEA
GO:0090286
E7ENN3 (UniProtKB)
IEA
GO:0034993
F5GXQ8 (UniProtKB)
IEA
GO:0051015
F5GXQ8 (UniProtKB)
IEA
GO:0090286
F5GXQ8 (UniProtKB)
IEA
GO:0034993
F5GYQ7 (UniProtKB)
IEA
GO:0051015
F5GYQ7 (UniProtKB)
IEA
GO:0090286
F5GYQ7 (UniProtKB)
IEA
GO:0034993
F5GZ83 (UniProtKB)
IEA
GO:0051015
F5GZ83 (UniProtKB)
IEA
GO:0090286
F5GZ83 (UniProtKB)
IEA
GO:0034993
F5H422 (UniProtKB)
IEA
GO:0051015
F5H422 (UniProtKB)
IEA
GO:0090286
F5H422 (UniProtKB)
IEA
GO:0034993
F5H4Q0 (UniProtKB)
IEA
GO:0051015
F5H4Q0 (UniProtKB)
IEA
GO:0090286
F5H4Q0 (UniProtKB)
IEA
GO:0034993
F5H6R8 (UniProtKB)
IEA
GO:0051015
F5H6R8 (UniProtKB)
IEA
GO:0090286
F5H6R8 (UniProtKB)
IEA
GO:0005654
F8WAI0 (UniProtKB)
IDA
GO:0005737
F8WAI0 (UniProtKB)
IDA
GO:0016021
F8WAI0 (UniProtKB)
IEA
GO:0031965
F8WAI0 (UniProtKB)
IDA
GO:0034993
F8WAI0 (UniProtKB)
IEA
GO:0051015
F8WAI0 (UniProtKB)
IEA
GO:0090286
F8WAI0 (UniProtKB)
IEA
GO:0005654
H0Y325 (UniProtKB)
IDA
GO:0005737
H0Y325 (UniProtKB)
IDA
GO:0031965
H0Y325 (UniProtKB)
IDA
GO:0034993
H0Y325 (UniProtKB)
IEA
GO:0051015
H0Y325 (UniProtKB)
IEA
GO:0090286
H0Y325 (UniProtKB)
IEA
GO:0005654
H0Y326 (UniProtKB)
IDA
GO:0005737
H0Y326 (UniProtKB)
IDA
GO:0031965
H0Y326 (UniProtKB)
IDA
GO:0034993
H0Y326 (UniProtKB)
IEA
GO:0051015
H0Y326 (UniProtKB)
IEA
GO:0090286
H0Y326 (UniProtKB)
IEA
GO:0005654
Q5JV20 (UniProtKB)
IDA
GO:0005737
Q5JV20 (UniProtKB)
IDA
GO:0016021
Q5JV20 (UniProtKB)
IEA
GO:0031965
Q5JV20 (UniProtKB)
IDA
GO:0034993
Q5JV20 (UniProtKB)
IEA
GO:0051015
Q5JV20 (UniProtKB)
IEA
GO:0090286
Q5JV20 (UniProtKB)
IEA
GO:0003779
Q8NF91 (UniProtKB)
IDA
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005515
Q8NF91 (UniProtKB)
IPI
GO:0005521
Q8NF91 (UniProtKB)
IPI
GO:0005634
Q8NF91 (UniProtKB)
IDA
GO:0005635
Q8NF91 (UniProtKB)
IDA
GO:0005640
Q8NF91 (UniProtKB)
IEA
GO:0005654
Q8NF91 (UniProtKB)
IDA
GO:0005737
Q8NF91 (UniProtKB)
IDA
GO:0005737
Q8NF91 (UniProtKB)
IDA
GO:0005794
Q8NF91 (UniProtKB)
IDA
GO:0005856
Q8NF91 (UniProtKB)
IEA
GO:0006997
Q8NF91 (UniProtKB)
NAS
GO:0007030
Q8NF91 (UniProtKB)
IDA
GO:0016021
Q8NF91 (UniProtKB)
IDA
GO:0030017
Q8NF91 (UniProtKB)
IDA
GO:0031965
Q8NF91 (UniProtKB)
IDA
GO:0034993
Q8NF91 (UniProtKB)
IDA
GO:0040023
Q8NF91 (UniProtKB)
IEA
GO:0042692
Q8NF91 (UniProtKB)
IDA
GO:0042802
Q8NF91 (UniProtKB)
IPI
GO:0042803
Q8NF91 (UniProtKB)
ISS
GO:0044822
Q8NF91 (UniProtKB)
IDA
GO:0044822
Q8NF91 (UniProtKB)
IDA
GO:0045211
Q8NF91 (UniProtKB)
IDA
GO:0051015
Q8NF91 (UniProtKB)
ISS
GO:0090286
Q8NF91 (UniProtKB)
IDA
GO:0090292
Q8NF91 (UniProtKB)
IDA

可能调控 SYNE1基因的相关microRNA:     

Reactome

MINT

BioGrid

IntAct

mentha

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 8 (disorder) 0.36 0 13 CLINVAR_CTD_human_ORPHANET
Emery-Dreifuss Muscular Dystrophy 4 0.32 1 3 CLINVAR_MGD_UNIPROT
Bipolar Disorder 0.130282454 7 3 BeFree_GAD_GWASCAT
Muscular Dystrophy, Emery-Dreifuss 0.121085767 4 0 BeFree_CTD_human
Mammary Neoplasms 0.12 1 0 CTD_human
Nasopharyngeal carcinoma 0.12 1 0 CTD_human
Autosomal Dominant Emery-Dreifuss Muscular Dystrophy (disorder) 0.12 0 0 ORPHANET
Substance-Related Disorders 0.12 1 0 CTD_human
Colorectal Neoplasms 0.12 2 0 CTD_human
Cerebellar Ataxia 0.003538676 3 0 BeFree_LHGDN

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