SSX5 (SSX family member 5)

symbol:
SSX5
locus group:
protein-coding gene
location:
Xp11.23
gene_family:
alias symbol:
None
alias name:
None
entrez id:
6758
ensembl gene id:
ENSG00000165583
ucsc gene id:
uc004diz.1
refseq accession:
NM_021015
hgnc_id:
HGNC:11339
approved reserved:
1996-03-12
Xp11.23
基因染色体位置图

The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneous humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. While some of the related SSX genes are involved in t(X;18)(p11.2;q11.2) translocations that are characteristically found in all synovial sarcomas, this gene does not appear to be involved in such translocations. Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2013]

该基因的产物属于家庭高度同源的滑膜肉瘤X(SSX)断点蛋白质。这些蛋白质可以充当转录抑制。它们也能够引发癌症患者自发的体液和细胞免疫应答,且是潜在的癌症基于疫苗免疫治疗的目标。虽然一些相关SSX基因参与T(X 18)(P11.2; q11.2),它们在所有的滑膜肉瘤特征发现易位,该基因似乎不参与这些易位。编码不同的两种亚型变种成绩单已经确定了这个基因。 [由RefSeq的,2013年7月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
SSX5基因的碱基突变:           仅显示部分snp
rs782820112       rs782818998       rs782820034       rs782817918       rs782814183       rs782813305       rs782811623       rs782808307       rs782800970       rs782800687       rs782799954       rs782798567       rs782797885       rs782793210       rs782794051       rs782785994       rs782784996      

SSX5基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
AAAGGCCTTCGATGATATTGC
59
CCTTGAAACCTAGTTTAGTCATGG
60
CTCAGTCCGTTCTGGAAGG
60
ATATCATCGAAGGCCCTAGC
59
AAAGGCCTTCGATGATATTGC
59
CCTTGAAACCTAGTTTAGTCATGG
60
ACTAAACTAGGTTTCAAGGCCA
60
GATTCCCACGGTTAGGGTC
60
TTAACAAGACATCTGGACCC
57
CTCTTCATAAATCACCAGTTGC
57
TTAACAAGACATCTGGACCC
57
CTCTTCATAAATCACCAGTTGC
58
TAACAAGACATCTGGACCCA
58
CTCTTCATAAATCACCAGTTGC
58
GGCCTTCGATGATATTGCC
59
GGCCTTGAAACCTAGTTTAGTC
59
TAACAAGACATCTGGACCCA
58
CTCTTCATAAATCACCAGTTGC
57
GGCCTTCGATGATATTGCC
59
GGCCTTGAAACCTAGTTTAGTC
59
      尚未收录相关数据

SSX5基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

SSX5基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003676
A0A087WYU7 (UniProtKB)
IEA
GO:0005634
A0A087WYU7 (UniProtKB)
IEA
GO:0006355
A0A087WYU7 (UniProtKB)
IEA
GO:0003676
O60225 (UniProtKB)
IEA
GO:0003714
O60225 (UniProtKB)
IBA
GO:0005515
O60225 (UniProtKB)
IPI
GO:0005634
O60225 (UniProtKB)
IBA
GO:0006351
O60225 (UniProtKB)
IEA
GO:0006355
O60225 (UniProtKB)
IEA
GO:1903507
O60225 (UniProtKB)
IBA
GO:0005634
Q5JQ63 (UniProtKB)
IEA
GO:0006355
Q5JQ63 (UniProtKB)
IEA

可能调控 SSX5基因的相关microRNA:     

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Liver carcinoma 0.002995792 1 0 BeFree_LHGDN
melanoma 0.000271442 1 0 BeFree
Monoclonal Gammopathy of Undetermined Significance 0.000271442 1 0 BeFree

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