SSX2B (SSX family member 2B)

symbol:
SSX2B
locus group:
protein-coding gene
location:
Xp11.22
gene_family:
alias symbol:
CT5.2b
alias name:
cancer/testis antigen family 5, me…
entrez id:
727837
ensembl gene id:
ENSG00000268447
ucsc gene id:
uc064zil.1
refseq accession:
NM_001164417
hgnc_id:
HGNC:22263
approved reserved:
2007-08-03
Xp11.22
基因染色体位置图

The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneous humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. This gene, and also the SSX1 and SSX4 family members, have been involved in t(X;18)(p11.2;q11.2) translocations that are characteristically found in all synovial sarcomas. This translocation results in the fusion of the synovial sarcoma translocation gene on chromosome 18 to one of the SSX genes on chromosome X. The encoded hybrid proteins are likely responsible for transforming activity. Alternative splicing of this gene results in multiple transcript variants. This gene also has an identical duplicate, GeneID: 6757, located about 45 kb upstream in the opposite orientation on chromosome X. [provided by RefSeq, Jul 2013]

该基因的产物属于家庭高度同源的滑膜肉瘤X(SSX)断点蛋白质。这些蛋白质可以充当转录抑制。它们也能够引发癌症患者自发的体液和细胞免疫应答,且是潜在的癌症基于疫苗免疫治疗的目标。这种基因,也是SSX1和SSX4家庭成员,曾参与T(X; 18)(P11.2; q11.2)易位了在所有的滑膜肉瘤特征性发现。这种易位导致18号染色体上的滑膜肉瘤易位基因融合到SSX基因之一在染色体X的编码杂合蛋白是用于转化的活性可能负责。这个基因的选择性剪接的结果在多个转录变体。该基因也具有相同的重复,GeneID:6757,位于约45 kb的上游在X染色体相反的方向[由提供RefSeq的,2013年7月]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
SSX2B基因的碱基突变:           仅显示部分snp
rs782819788       rs782516385       rs782148220       rs781856239       rs4232856       rs17355429      

SSX2B基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
CTGATGCGACAGAAGTCTC
58
TTCTTGGGCATGATCTTCG
58
CCTAACCGTGGGAATCAGG
60
CTTCTTGGGCATGATCTTCG
59
CCCTAACCGTGGGAATCAG
60
TCTTGGGCATGATCTTCGG
60
CTCTAGAGTTTGGAAACCTTTACC
59
CTTCTTGGGCATGATCTTCG
59
CTCTAGAGTTTGGAAACCTTTACC
59
TCTTGGGCATGATCTTCGG
60
CCTAACCGTGGGAATCAGG
60
TCTTGGGCATGATCTTCGG
60
      尚未收录相关数据

SSX2B基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

SSX2B基因的本体(GO)信息:

可能调控 SSX2B基因的相关microRNA:     

BioGrid

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
synovial sarcoma 0.034473118 127 0 BeFree
Malignant neoplasm of testis 0.005700279 21 0 BeFree
Sarcoma 0.004614512 17 0 BeFree
Carcinogenesis 0.002714419 10 0 BeFree
melanoma 0.002714419 10 0 BeFree
Neoplasm Metastasis 0.001900093 7 0 BeFree
Malignant neoplasm of breast 0.001628651 6 0 BeFree
Synovial sarcoma, biphasic 0.001085767 4 0 BeFree
Breast Carcinoma 0.001085767 4 0 BeFree
Soft Tissue Neoplasms 0.001085767 4 0 BeFree

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