SSX2 (SSX family member 2)

symbol:
SSX2
locus group:
protein-coding gene
location:
Xp11.22
gene_family:
alias symbol:
HOM-MEL-40|HD21|MGC3884|MGC15364|MGC119055|CT5.2a
alias name:
sarcoma, synovial, X-chromosome-re…
entrez id:
6757
ensembl gene id:
ENSG00000241476
ucsc gene id:
uc004dqz.3
refseq accession:
NM_003147
hgnc_id:
HGNC:11336
approved reserved:
1995-03-06
Xp11.22
基因染色体位置图

The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneous humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. This gene, and also the SSX1 and SSX4 family members, have been involved in t(X;18)(p11.2;q11.2) translocations that are characteristically found in all synovial sarcomas. This translocation results in the fusion of the synovial sarcoma translocation gene on chromosome 18 to one of the SSX genes on chromosome X. The encoded hybrid proteins are likely responsible for transforming activity. Alternative splicing of this gene results in multiple transcript variants. This gene also has an identical duplicate, GeneID: 727837, located about 45 kb downstream in the opposite orientation on chromosome X. [provided by RefSeq, Jul 2013]

该基因的产物属于家庭高度同源的滑膜肉瘤X(SSX)断点蛋白质。这些蛋白质可以充当转录抑制。它们也能够引发癌症患者自发的体液和细胞免疫应答,且是潜在的癌症基于疫苗免疫治疗的目标。这种基因,也是SSX1和SSX4家庭成员,曾参与T(X; 18)(P11.2; q11.2)易位了在所有的滑膜肉瘤特征性发现。这种易位导致18号染色体上的滑膜肉瘤易位基因融合到SSX基因之一在染色体X的编码杂合蛋白是用于转化的活性可能负责。这个基因的选择性剪接的结果在多个转录变体。该基因也具有相同的重复,GeneID:727837,相距约45 kb的下游在X染色体相反方向[由RefSeq的,2013年7月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
SSX2基因的碱基突变:           仅显示部分snp
rs5943733      

SSX2基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
CTGATGCGACAGAAGTCTC
58
TTCTTGGGCATGATCTTCG
58
TCATGTGTAATAAACGGGCC
58
GACGTTCAACCTGATTCCC
59
CCTAACCGTGGGAATCAGG
60
TCTTGGGCATGATCTTCGG
60
GAGATCTGGAAATAGGGAGGC
60
ACTGAATCGACCAATGTTGTG
59
GATTAACAAGACATCCGGACC
59
ATAAATCACCAGCTGCTTTCTC
59
CTCTAGAGTTTGGAAACCTTTACC
59
CTTCTTGGGCATGATCTTCG
59
TAATAAACGGGCCGAAGAC
58
ATCTGAGGACGTTCAACCT
58
AGAGATCTGGAAATAGGGAGG
58
CTGAATCGACCAATGTTGTG
58
GTAATAAACGGGCCGAAGAC
59
TCTGAGGACGTTCAACCTG
59
GATTAACAAGACATCCGGACC
59
TAAATCACCAGCTGCTTTCTC
59
转录因子
影响基因
影响类型
参考文献链接(PubMed)
SSX2
MMP2
Unknown

SSX2基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

SSX2基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003676
A0A087WVX7 (UniProtKB)
IEA
GO:0005634
A0A087WVX7 (UniProtKB)
IEA
GO:0006355
A0A087WVX7 (UniProtKB)
IEA
GO:0003676
Q16385 (UniProtKB)
IEA
GO:0003714
Q16385 (UniProtKB)
IBA
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005515
Q16385 (UniProtKB)
IPI
GO:0005634
Q16385 (UniProtKB)
IBA
GO:0005634
Q16385 (UniProtKB)
IDA
GO:0006351
Q16385 (UniProtKB)
IEA
GO:0006355
Q16385 (UniProtKB)
NAS
GO:1903507
Q16385 (UniProtKB)
IBA

可能调控 SSX2基因的相关microRNA:     

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
synovial sarcoma 0.282646168 128 0 BeFree_CTD_human_LHGDN_ORPHANET
Peripheral Neuropathy 0.12 1 0 CTD_human
Prostatic Neoplasms 0.12 1 0 CTD_human
Malignant neoplasm of testis 0.005700279 21 0 BeFree
Sarcoma 0.004614512 17 0 BeFree
Liver carcinoma 0.002995792 1 0 BeFree_LHGDN
Carcinogenesis 0.002714419 10 0 BeFree
melanoma 0.002714419 10 0 BeFree
Neoplasm Metastasis 0.001900093 7 0 BeFree
Malignant neoplasm of breast 0.001628651 6 0 BeFree

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