SSX1 (SSX family member 1)

symbol:
SSX1
locus group:
protein-coding gene
location:
Xp11.23
gene_family:
alias symbol:
CT5.1
alias name:
cancer/testis antigen family 5, me…
entrez id:
6756
ensembl gene id:
ENSG00000126752
ucsc gene id:
uc004djb.2
refseq accession:
NM_005635
hgnc_id:
HGNC:11335
approved reserved:
1995-07-06
Xp11.23
基因染色体位置图

The product of this gene belongs to the family of highly homologous synovial sarcoma X (SSX) breakpoint proteins. These proteins may function as transcriptional repressors. They are also capable of eliciting spontaneous humoral and cellular immune responses in cancer patients, and are potentially useful targets in cancer vaccine-based immunotherapy. This gene, and also the SSX2 and SSX4 family members, have been involved in t(X;18)(p11.2;q11.2) translocations that are characteristically found in all synovial sarcomas. This translocation results in the fusion of the synovial sarcoma translocation gene on chromosome 18 to one of the SSX genes on chromosome X. The encoded hybrid proteins are likely responsible for transforming activity. Alternative splicing of this gene results in multiple transcript variants. A related pseudogene has been identified on chromosome X. [provided by RefSeq, Jul 2013]

该基因的产物属于家庭高度同源的滑膜肉瘤X(SSX)断点蛋白质。这些蛋白质可以充当转录抑制。它们也能够引发癌症患者自发的体液和细胞免疫应答,且是潜在的癌症基于疫苗免疫治疗的目标。这种基因,也是SSX2和SSX4家庭成员,曾参与T(X; 18)(P11.2; q11.2)易位了在所有的滑膜肉瘤特征性发现。这种易位导致18号染色体上的滑膜肉瘤易位基因融合到SSX基因之一在染色体X的编码杂合蛋白是用于转化的活性可能负责。这个基因的选择性剪接的结果在多个转录变体。一个相关的假基因已被确定在[由RefSeq的,2013年7月提供] X染色体

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
SSX1基因的碱基突变:           仅显示部分snp
rs782816656       rs782820049       rs782814074       rs782815803       rs782813860       rs782801729       rs782811751       rs782800954       rs782798273       rs782795412       rs782797795       rs782795047       rs782789586       rs782792517       rs782793205       rs782785818       rs782786017      

SSX1基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
ATGTGTAATAAACAGGCCACAG
59
AGGATGTTCAACCTGAATCCT
59
CATGTGTAATAAACAGGCCAC
58
GGATGTTCAACCTGAATCCT
58
TCATGTGTAATAAACAGGCCAC
59
GATGTTCAACCTGAATCCTGC
60
      尚未收录相关数据

SSX1基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

SSX1基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003676
Q16384 (UniProtKB)
IEA
GO:0003714
Q16384 (UniProtKB)
TAS
GO:0005515
Q16384 (UniProtKB)
IPI
GO:0005634
Q16384 (UniProtKB)
IEA
GO:0006351
Q16384 (UniProtKB)
IEA
GO:0006355
Q16384 (UniProtKB)
IEA
GO:1903507
Q16384 (UniProtKB)
IEA

可能调控 SSX1基因的相关microRNA:     

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
synovial sarcoma 0.271003963 57 0 BeFree_CTD_human_LHGDN_ORPHANET
Peripheral Neuropathy 0.12 1 0 CTD_human
Alzheimer's Disease 0.002367032 1 0 GAD
Neoplasm Metastasis 0.002171535 8 0 BeFree
Liver carcinoma 0.001357209 5 0 BeFree
Sarcoma 0.001085767 4 0 BeFree
Malignant neoplasm of testis 0.001085767 4 0 BeFree
melanoma 0.000814326 3 0 BeFree
Multiple Myeloma 0.000542884 2 0 BeFree
Monoclonal Gammopathy of Undetermined Significance 0.000271442 1 0 BeFree

联系方式

山东省济南市 高新区 崇华路359号 三庆世纪财富中心C1115室

电话: 0531-88819269

E-mail: product@genelibs.com

微信公众号

关注微信订阅号,实时查看信息,关注医学生物学动态。