RPGR (retinitis pigmentosa GTPase regulator)

symbol:
RPGR
locus group:
protein-coding gene
location:
Xp11.4
gene_family:
alias symbol:
CORDX1
alias name:
None
entrez id:
6103
ensembl gene id:
ENSG00000156313
ucsc gene id:
uc004deb.4
refseq accession:
NM_000328
hgnc_id:
HGNC:10295
approved reserved:
1999-04-29
Xp11.4
基因染色体位置图

RPGR(Retinitis Pigmentosa GTPase Regulator)是一种主要在视网膜中表达的基因,其编码的蛋白质参与维持光感受器细胞(视杆和视锥细胞)的结构与功能。该基因属于X染色体连锁遗传,突变可导致视网膜色素变性(Retinitis Pigmentosa, RP)等遗传性眼病,表现为夜盲、视野缩小及视力丧失。RPGR蛋白通过与RPGRIP1(RPGR-interacting protein 1)等蛋白相互作用,稳定纤毛(光感受器外节的特殊结构)的运输功能,确保感光分子如视紫红质的正常定位。RPGR基因家族属于纤毛相关基因家族,其成员多参与细胞纤毛的组装或信号传导,共同特点是维持纤毛的稳定性与物质运输功能。若RPGR发生突变(如移码突变或剪切异常),会导致蛋白功能丧失,引发光感受器细胞变性。过表达RPGR可能干扰纤毛内运输平衡,而表达降低则直接导致光感受器功能障碍。约70%的X连锁视网膜色素变性病例与RPGR突变相关,部分患者还伴随原发性纤毛运动障碍(如慢性鼻窦炎或不育)。研究还发现RPGR与CEP290等纤毛疾病相关基因存在功能协同,提示其在更广泛的纤毛疾病中的作用。目前基因治疗(如AAV载体递送正常RPGR)正在临床试验中探索。

This gene encodes a protein with a series of six RCC1-like domains (RLDs), characteristic of the highly conserved guanine nucleotide exchange factors. The encoded protein is found in the Golgi body and interacts with RPGRIP1. This protein localizes to the outer segment of rod photoreceptors and is essential for their viability. Mutations in this gene have been associated with X-linked retinitis pigmentosa (XLRP). Multiple alternatively spliced transcript variants that encode different isoforms of this gene have been reported, but the full-length natures of only some have been determined. [provided by RefSeq, Dec 2008]

这个基因编码的蛋白质具有一系列的六个RCC1样结构域(RLD)组合,高度保守的鸟嘌呤核苷酸交换因子的特征。所编码的蛋白质在高尔基体中发现,并与RPGRIP1相互作用。此蛋白质定位于视杆细胞的外节,是他们的存活所必需的。在这种基因突变与X连锁视网膜色素变性(XLRP)相关联。编码该基因的不同同种型的多个可变剪接转录物变体已有报道,但只有一些全长性质已经确定。 [由RefSeq的,2008年12月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
RPGR基因的碱基突变:           仅显示部分snp
rs868231009       rs869239943       rs781740100       rs781728049       rs781651190       rs781700487       rs781614138       rs781536091       rs781545955       rs781560777       rs781563262       rs781514081       rs781531873       rs781534381       rs781416733       rs781426079       rs781426804      

RPGR基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
GTTAAATTGGTTGCTTGTGGTG
59
AGGTTAAACTGCTATACGGCA
59
CTGCCCTAACTGAGGATGG
59
CAATGGTCACTTGCTGAGG
58
CCAATGATGATAGCTCAGCT
57
GCATCATCAAGCATGTATCC
57
GAAACAACACCAAGCAAAGAC
58
CGGCTCATTGTTATTCTTGAC
57
AAGCCAACCTAGAGGAACG
59
TGCATCATCAAGCATGTATCC
58
AAACAACACCAAGCAAAGAC
57
CGGCTCATTGTTATTCTTGAC
57
CCCTAACTGAGGATGGAAGAC
59
CCAATGGTCACTTGCTGAG
58
GTTAAATTGGTTGCTTGTGGTG
59
GGTTAAACTGCTATACGGCAG
59
CCCTAACTGAGGATGGAAGAC
59
CAATGGTCACTTGCTGAGG
58
AACAACACCAAGCAAAGAC
57
CGGCTCATTGTTATTCTTGAC
57
      尚未收录相关数据

RPGR基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

RPGR基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0007601
H7C4L1 (UniProtKB)
IEA
GO:0042384
H7C4L1 (UniProtKB)
IEA
GO:0001750
Q92834 (UniProtKB)
IDA
GO:0005085
Q92834 (UniProtKB)
IEA
GO:0005515
Q92834 (UniProtKB)
IPI
GO:0005515
Q92834 (UniProtKB)
IPI
GO:0005515
Q92834 (UniProtKB)
IPI
GO:0005515
Q92834 (UniProtKB)
IPI
GO:0005515
Q92834 (UniProtKB)
IPI
GO:0005515
Q92834 (UniProtKB)
IPI
GO:0005515
Q92834 (UniProtKB)
IPI
GO:0005794
Q92834 (UniProtKB)
ISS
GO:0005813
Q92834 (UniProtKB)
IDA
GO:0006886
Q92834 (UniProtKB)
TAS
GO:0007601
Q92834 (UniProtKB)
IMP
GO:0036064
Q92834 (UniProtKB)
ISS
GO:0036126
Q92834 (UniProtKB)
ISS
GO:0042073
Q92834 (UniProtKB)
ISS
GO:0042384
Q92834 (UniProtKB)
IMP
GO:0043547
Q92834 (UniProtKB)
IEA
GO:0044822
Q92834 (UniProtKB)
IDA
GO:0050896
Q92834 (UniProtKB)
IEA

可能调控 RPGR基因的相关microRNA:     

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Retinitis Pigmentosa, X-Linked, And Sinorespiratory Infections, With Or Without Deafness 0.48 1 0 CLINVAR_CTD_human_ORPHANET_UNIPROT
Retinitis Pigmentosa 0.418185333 61 6 BeFree_CLINVAR_CTD_human_GAD_LHGDN_ORPHANET
RETINITIS PIGMENTOSA 3 0.320814326 11 1 BeFree_CTD_human_MGD_UNIPROT
CONE-ROD DYSTROPHY, X-LINKED, 1 0.32 0 5 CLINVAR_CTD_human_MGD
Retinal Degeneration 0.127338862 19 0 BeFree_CTD_human_LHGDN
Retinal Dystrophies 0.123181358 5 0 BeFree_CTD_human_GAD
Age related macular degeneration 0.122995792 2 0 BeFree_CTD_human_LHGDN
Respiratory Tract Infections 0.12 1 0 CTD_human
hearing impairment 0.12 1 0 CTD_human
MACULAR DEGENERATION, X-LINKED ATROPHIC 0.12 0 0 CLINVAR

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