PSCA (prostate stem cell antigen)

symbol:
PSCA
locus group:
protein-coding gene
location:
8q24.3
gene_family:
alias symbol:
lncPSCA
alias name:
None
entrez id:
8000
ensembl gene id:
ENSG00000167653
ucsc gene id:
uc003ywu.4
refseq accession:
NM_005672
hgnc_id:
HGNC:9500
approved reserved:
1999-08-25
8q24.3
基因染色体位置图

This gene encodes a glycosylphosphatidylinositol-anchored cell membrane glycoprotein. In addition to being highly expressed in the prostate it is also expressed in the bladder, placenta, colon, kidney, and stomach. This gene is up-regulated in a large proportion of prostate cancers and is also detected in cancers of the bladder and pancreas. This gene includes a polymorphism that results in an upstream start codon in some individuals; this polymorphism is thought to be associated with a risk for certain gastric and bladder cancers. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2010]

该基因编码一个糖基锚定的细胞膜糖蛋白。除了在前列腺它也是在膀胱,胎盘,结肠癌,肾癌和胃癌表达被高度表达。该基因是上调大比例的前列腺癌,并在膀胱和胰腺的癌症也检测到。这种基因包括多态性,其导致在一些个人的上游起始密码子;这种多态性被认为是与某些胃和膀胱癌的危险有关。选择性剪接结果在多个抄本变形。 [由RefSeq的,2010年2月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
PSCA基因的碱基突变:           仅显示部分snp
rs2920288       rs2976384       rs2978974       rs4428653       rs4541887       rs4736369       rs9297976       rs10108059       rs10110864       rs12546978       rs13264644       rs60024780       rs60443431       rs72690913       rs73379644       rs73714657       rs75743917      

PSCA基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TTAGATGATTCAGACGATGGG
57
CTTTGCAGGAGTAGCACAG
59
ATATAAAGTCACCTGAGGCCC
59
CTTTGCAGGAGTAGCACAG
59
TTAGATGATTCAGACGATGGG
57
CTTTGCAGGAGTAGCACAG
59
ATATAAAGTCACCTGAGGCCC
59
CTTTGCAGGAGTAGCACAG
59
TAGATGATTCAGACGATGGGA
58
CTTTGCAGGAGTAGCACAG
59
TAGATGATTCAGACGATGGGA
58
CTTTGCAGGAGTAGCACAG
59
TATAAAGTCACCTGAGGCCC
59
CTTTGCAGGAGTAGCACAG
59
TATAAAGTCACCTGAGGCCC
59
CTTTGCAGGAGTAGCACAG
59
ATAAAGTCACCTGAGGCCC
59
CTTTGCAGGAGTAGCACAG
59
AGATGATTCAGACGATGGGA
58
CTTTGCAGGAGTAGCACAG
59
转录因子
影响基因
影响类型
参考文献链接(PubMed)
AR
PSCA
Unknown

PSCA基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

PSCA基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0005886
O43653 (UniProtKB)
IEA
GO:0031225
O43653 (UniProtKB)
IEA
GO:0070062
O43653 (UniProtKB)
IDA
GO:0070062
O43653 (UniProtKB)
IDA

可能调控 PSCA基因的相关microRNA:     

BioGrid

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Duodenal Ulcer 0.243452799 4 1 BeFree_CTD_human_GAD_GWASCAT
Stomach Neoplasms 0.134830952 7 0 BeFree_CTD_human_GAD_LHGDN
Malignant neoplasm of urinary bladder 0.128805692 16 6 BeFree_GAD_GWASCAT
Prostatic Neoplasms 0.128444493 5 0 BeFree_CTD_human_LHGDN
Bladder Neoplasm 0.125276948 5 1 BeFree_CTD_human_GAD
Linitis Plastica 0.12 1 0 CTD_human
Malignant neoplasm of stomach 0.009771907 36 8 BeFree
Stomach Carcinoma 0.009771907 36 8 BeFree
Malignant neoplasm of prostate 0.009771907 36 0 BeFree
Prostate carcinoma 0.009229024 34 0 BeFree

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