PKD1 (polycystin 1, transient receptor potential channel interacting)

symbol:
PKD1
locus group:
protein-coding gene
location:
16p13.3
gene_family:
Transient receptor potential cation channels
alias symbol:
PBP|Pc-1|TRPP1
alias name:
polycystin 1|transient receptor po…
entrez id:
5310
ensembl gene id:
ENSG00000008710
ucsc gene id:
uc002cos.1
refseq accession:
NM_000296
hgnc_id:
HGNC:9008
approved reserved:
2001-06-22
16p13.3
基因染色体位置图

PKD1(多囊肾病基因1)是人类基因组中一个非常重要的基因,属于多囊蛋白基因家族。它位于第16号染色体上(16p13.3),编码一种称为多囊蛋白-1(polycystin-1)的跨膜蛋白。多囊蛋白-1是一种大型膜蛋白,主要分布在肾脏、肝脏和胰腺等器官的上皮细胞中,尤其在肾小管上皮细胞的纤毛上富集。它的主要功能是作为机械感受器,感知尿流等机械刺激并传递信号,参与细胞增殖、分化、凋亡以及细胞间相互作用的调控。PKD1基因突变是导致常染色体显性多囊肾病(ADPKD)的主要原因,约占ADPKD病例的85%。ADPKD是一种常见的遗传性肾脏疾病,特征为双侧肾脏中出现大量充满液体的囊肿,最终导致肾功能衰竭。PKD1突变通常导致多囊蛋白-1功能丧失或异常,破坏正常的细胞信号传导和纤毛功能,进而促进囊肿形成。PKD1基因属于多囊蛋白基因家族,该家族还包括PKD2等基因,它们编码的蛋白质在结构和功能上具有相似性,都参与细胞信号传导和机械感知。PKD1过表达可能导致细胞增殖异常,而表达降低则会影响肾脏发育和功能维持。除了肾脏疾病,PKD1的异常还与肝脏囊肿、颅内动脉瘤等并发症相关。研究表明,PKD1还参与Wnt、mTOR等信号通路的调控,其突变可能影响这些通路的活动。由于PKD1在多种生理过程中的重要作用,针对该基因及其编码蛋白的研究对于理解囊肿性疾病机制和开发治疗策略具有重要意义。

This gene encodes a member of the polycystin protein family. The encoded glycoprotein contains a large N-terminal extracellular region, multiple transmembrane domains and a cytoplasmic C-tail. It is an integral membrane protein that functions as a regulator of calcium permeable cation channels and intracellular calcium homoeostasis. It is also involved in cell-cell/matrix interactions and may modulate G-protein-coupled signal-transduction pathways. It plays a role in renal tubular development, and mutations in this gene cause autosomal dominant polycystic kidney disease type 1 (ADPKD1). ADPKD1 is characterized by the growth of fluid-filled cysts that replace normal renal tissue and result in end-stage renal failure. Splice variants encoding different isoforms have been noted for this gene. Also, six pseudogenes, closely linked in a known duplicated region on chromosome 16p, have been described. [provided by RefSeq, Oct 2008]

该基因编码的多囊蛋白家族的一个成员。所编码的糖蛋白中含有大量的N末端胞外区,多个跨膜结构域和胞质的C-尾。它是一个完整的膜蛋白,其功能是作为钙可渗透阳离子通道和胞内钙内环境稳定的调节器。它也参与细胞 - 细胞/基质相互作用和可调节G蛋白偶联的信号传导途径。它在肾小管发展中的作用,并在这个基因导致常染色体显性多囊肾病1型(ADPKD1)突变。 ADPKD1特征是填充流体的囊肿即替换在终末期肾衰竭正常肾组织和结果的生长。编码不同亚型的剪接变异体已经注意到了这个基因。也,六假,在16p染色体的已知重复区域紧密相连,已经描述。 [由RefSeq的,2008年10月提供]

PKD1基因的碱基序列:[NCBI]
Loading Gene Browser...
PKD1基因的碱基突变:           仅显示部分snp
rs10960       rs1184357       rs2854581       rs2854582       rs2854583       rs2855358       rs2855359       rs2855360       rs2855361       rs2855362       rs2855363       rs2855366       rs2855367       rs2855368       rs2859787       rs3087632       rs3209986      

PKD1基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
GAAGGCCACTACCTGTCTG
59
ATGAAGAAGGTGTAGGGCC
59
GTCCTAGTGAGGTACAGCC
58
GTTCTGGAAGGTCAGGGAC
59
CAGGTGAGTACCTCCTGAC
58
AAGTACACGTAGGAGCTGC
59
CACTGAAGGTCTTGCTGGA
59
TGCCATGTAGCCTCTTGAC
59
TCAATGACTGGCTTTCGGT
59
TGCTTGTCAAAGAAGCCAC
59
TTTGTGTTTCCTGAGCCGA
59
ATGACCATGTAGGTCACCAG
59
AATGTCATGCACACCTACG
58
CACTCCAAGGACACAATGG
58
TACCAACAGTGCTGATCCG
59
CCAAGTACACGTAGGAGCT
58
TTCAAGCTCTCACTGACGG
59
TTACGTTGTAGTTCACGGTG
58
CTCAACATCACAGGAGACCT
59
CCATCCGAGATGGTGACTC
59
      尚未收录相关数据

PKD1基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

PKD1基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0001822
H3BV77 (UniProtKB)
IEA
GO:0016021
H3BV77 (UniProtKB)
IEA
GO:0000139
P98161 (UniProtKB)
TAS
GO:0000139
P98161 (UniProtKB)
TAS
GO:0000139
P98161 (UniProtKB)
TAS
GO:0000139
P98161 (UniProtKB)
TAS
GO:0000139
P98161 (UniProtKB)
TAS
GO:0000139
P98161 (UniProtKB)
TAS
GO:0001502
P98161 (UniProtKB)
IEA
GO:0001701
P98161 (UniProtKB)
ISS
GO:0001822
P98161 (UniProtKB)
ISS
GO:0001889
P98161 (UniProtKB)
IEA
GO:0001892
P98161 (UniProtKB)
ISS
GO:0002133
P98161 (UniProtKB)
ISS
GO:0005262
P98161 (UniProtKB)
ISS
GO:0005262
P98161 (UniProtKB)
IBA
GO:0005515
P98161 (UniProtKB)
IPI
GO:0005515
P98161 (UniProtKB)
IPI
GO:0005515
P98161 (UniProtKB)
IPI
GO:0005515
P98161 (UniProtKB)
IPI
GO:0005515
P98161 (UniProtKB)
IPI
GO:0005515
P98161 (UniProtKB)
IPI
GO:0005634
P98161 (UniProtKB)
ISS
GO:0005737
P98161 (UniProtKB)
ISS
GO:0005829
P98161 (UniProtKB)
IEA
GO:0005886
P98161 (UniProtKB)
IDA
GO:0005887
P98161 (UniProtKB)
TAS
GO:0005929
P98161 (UniProtKB)
ISS
GO:0006611
P98161 (UniProtKB)
ISS
GO:0006807
P98161 (UniProtKB)
IEA
GO:0007050
P98161 (UniProtKB)
ISS
GO:0007156
P98161 (UniProtKB)
TAS
GO:0007160
P98161 (UniProtKB)
TAS
GO:0007161
P98161 (UniProtKB)
TAS
GO:0007204
P98161 (UniProtKB)
IEA
GO:0007259
P98161 (UniProtKB)
ISS
GO:0007507
P98161 (UniProtKB)
IEP
GO:0009653
P98161 (UniProtKB)
TAS
GO:0009986
P98161 (UniProtKB)
IEA
GO:0016021
P98161 (UniProtKB)
NAS
GO:0016323
P98161 (UniProtKB)
IDA
GO:0016328
P98161 (UniProtKB)
IEA
GO:0016337
P98161 (UniProtKB)
IEA
GO:0018105
P98161 (UniProtKB)
ISS
GO:0019901
P98161 (UniProtKB)
IPI
GO:0019904
P98161 (UniProtKB)
IPI
GO:0021510
P98161 (UniProtKB)
IEP
GO:0021915
P98161 (UniProtKB)
IEP
GO:0030010
P98161 (UniProtKB)
IEA
GO:0030155
P98161 (UniProtKB)
IEA
GO:0030246
P98161 (UniProtKB)
IEA
GO:0030660
P98161 (UniProtKB)
TAS
GO:0030660
P98161 (UniProtKB)
TAS
GO:0030660
P98161 (UniProtKB)
TAS
GO:0031512
P98161 (UniProtKB)
ISS
GO:0031659
P98161 (UniProtKB)
IDA
GO:0032092
P98161 (UniProtKB)
ISS
GO:0034405
P98161 (UniProtKB)
IEA
GO:0036303
P98161 (UniProtKB)
IEA
GO:0042994
P98161 (UniProtKB)
ISS
GO:0043588
P98161 (UniProtKB)
IEP
GO:0044325
P98161 (UniProtKB)
IPI
GO:0045944
P98161 (UniProtKB)
IDA
GO:0048565
P98161 (UniProtKB)
IEP
GO:0048754
P98161 (UniProtKB)
IDA
GO:0048806
P98161 (UniProtKB)
IEP
GO:0050982
P98161 (UniProtKB)
ISS
GO:0050982
P98161 (UniProtKB)
IBA
GO:0051216
P98161 (UniProtKB)
IEP
GO:0060170
P98161 (UniProtKB)
TAS
GO:0060236
P98161 (UniProtKB)
IEA
GO:0060428
P98161 (UniProtKB)
IEP
GO:0060674
P98161 (UniProtKB)
ISS
GO:0061136
P98161 (UniProtKB)
IDA
GO:0070062
P98161 (UniProtKB)
IDA
GO:0070062
P98161 (UniProtKB)
IDA
GO:0070588
P98161 (UniProtKB)
ISS
GO:0072164
P98161 (UniProtKB)
IEP
GO:0072177
P98161 (UniProtKB)
IEP
GO:0072205
P98161 (UniProtKB)
IEP
GO:0072218
P98161 (UniProtKB)
IEP
GO:0072237
P98161 (UniProtKB)
IEP
GO:0072287
P98161 (UniProtKB)
IEP
GO:0072372
P98161 (UniProtKB)
ISS

可能调控 PKD1基因的相关microRNA:     

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Polycystic Kidney, Autosomal Dominant 0.346886184 313 12 BeFree_CLINVAR_CTD_human_GAD_LHGDN
Polycystic Kidney Diseases 0.229475 60 0 BeFree_CTD_human_GAD_LHGDN_RGD
POLYCYSTIC KIDNEY DISEASE 1 0.204538567 33 10 BeFree_GAD_MGD_UNIPROT
Cyst 0.137402074 38 1 BeFree_CTD_human_LHGDN
Polycystic kidneys, severe infantile with tuberous sclerosis 0.12 0 0 ORPHANET
Autosomal Recessive Polycystic Kidney Disease 0.081628651 6 0 BeFree_MGD
Kidney Failure, Chronic 0.007057489 26 0 BeFree
Tuberous Sclerosis 0.006524536 15 0 BeFree_LHGDN
Kidney Failure 0.005971721 22 0 BeFree
Kidney Diseases 0.004538567 8 0 BeFree_GAD

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