PCBP2 (poly(rC) binding protein 2)

symbol:
PCBP2
locus group:
protein-coding gene
location:
12q13.13
gene_family:
alias symbol:
HNRPE2|hnRNP-E2|HNRNPE2
alias name:
heterogenous nuclear ribonucleopro…
entrez id:
5094
ensembl gene id:
ENSG00000197111
ucsc gene id:
uc001sdb.5
refseq accession:
NM_005016
hgnc_id:
HGNC:8648
approved reserved:
1996-06-07
12q13.13
基因染色体位置图

PCBP2(多聚胞嘧啶结合蛋白2)属于PCBP基因家族,也称为hnRNP E家族,该家族成员主要参与RNA代谢,包括mRNA稳定性调控、剪接和翻译控制。PCBP2作为一种RNA结合蛋白,通过识别并结合富含胞嘧啶的序列(如poly(C)区域)发挥作用,广泛参与细胞内的转录后调控。其表达产物在维持mRNA稳定性、调控铁代谢(通过与铁响应元件IRE结合影响铁蛋白和转铁蛋白受体的表达)以及病毒RNA复制(如与脊髓灰质炎病毒RNA相互作用)中起关键作用。PCBP2的突变可能导致RNA结合能力下降,影响靶mRNA的稳定性或翻译效率,例如与神经退行性疾病或癌症发展相关。在家族共性方面,PCBP家族成员(PCBP1-4)均含有KH结构域,介导RNA/DNA结合,并参与细胞增殖、分化及应激响应。当PCBP2过表达时,可能增强对靶mRNA的稳定作用,促进某些促癌基因(如c-myc)的表达,与肝癌等肿瘤发生相关;而表达降低则可能导致铁代谢紊乱或病毒复制异常。此外,PCBP2与阿尔茨海默病相关蛋白APP的mRNA存在相互作用,其表达异常可能影响APP加工过程。该基因还通过调控选择性剪接参与红细胞分化,其缺失可导致α-地中海贫血表型。

The protein encoded by this gene appears to be multifunctional. Along with PCBP-1 and hnRNPK, it is one of the major cellular poly(rC)-binding proteins. The encoded protein contains three K-homologous (KH) domains which may be involved in RNA binding. Together with PCBP-1, this protein also functions as a translational coactivator of poliovirus RNA via a sequence-specific interaction with stem-loop IV of the IRES, promoting poliovirus RNA replication by binding to its 5'-terminal cloverleaf structure. It has also been implicated in translational control of the 15-lipoxygenase mRNA, human papillomavirus type 16 L2 mRNA, and hepatitis A virus RNA. The encoded protein is also suggested to play a part in formation of a sequence-specific alpha-globin mRNP complex which is associated with alpha-globin mRNA stability. This multiexon structural mRNA is thought to be retrotransposed to generate PCBP-1, an intronless gene with functions similar to that of PCBP2. This gene and PCBP-1 have paralogous genes (PCBP3 and PCBP4) which are thought to have arisen as a result of duplication events of entire genes. Thsi gene also has two processed pseudogenes (PCBP2P1 and PCBP2P2). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

由该基因编码的蛋白质似乎是多功能的。随着PCBP-1和hnRNPK,它是主要的蜂窝聚(RC)结合蛋白之一。所编码的蛋白质包含可能参与RNA结合3 K - 同源(KH)域。连同PCBP-1,这种蛋白还用作通过与IRES的茎 - 环四序列特异性相互作用脊髓灰质炎病毒RNA的转译共激活剂,通过结合到其5‘端三叶草结构促进脊髓灰质炎病毒RNA的复制。它也被牵连的15-脂肪氧化酶的mRNA的翻译控制,人乳头瘤病毒16型的L2的mRNA,和A型肝炎病毒的RNA。所编码的蛋白质也建议在形成其中用α-珠蛋白mRNA的稳定性相关的特定序列-α-珠蛋白MRNP复杂的过程中发挥作用。此multiexon结构的mRNA被认为是re??trotransposed生成PCBP-1,无内含子基因具有类似于PCBP2的功能。此基因和PCBP-1具有这被认为旁系同源基??因(PCBP3和PCBP4)到已经出现作为整个基因复制事件的结果。 Thsi基因也有两个加工假(PCBP2P1和PCBP2P2)。已发现该基因编码不同亚型的多个抄本变形。 [由RefSeq的,2008年7月提供]

PCBP2基因的碱基序列:[NCBI]
Loading Gene Browser...
PCBP2基因的碱基突变:           仅显示部分snp
rs4790       rs1048933       rs1049190       rs1049193       rs3837460       rs55730102       rs61928104       rs75238912       rs112075383       rs112273797       rs112536152       rs112797512       rs113004540       rs114054416       rs114883672       rs115504695       rs115540772      

PCBP2基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TATCACTTTGGCTGGACCC
59
AGCTGCTTATGTCCTCTTCC
60
ATCAATGTCAGGCTTTCCTC
58
CAGCAGAAAGGGATTATGGA
57
TATCACTTTGGCTGGACCC
59
AGCTGCTTATGTCCTCTTCC
60
CTCGGATTACAGATAGTACAGG
57
ATGCCAGCAATAGTGATGG
58
TCTCCGGTCATCTTTGCAG
60
GCAGCTTGGTCAAATCTGG
60
CATGGAAAGGAAGTTGGCAG
60
ATGTTGATACGTGCACCAC
59
TGGTCATGTTGGAGACTCTC
59
TGCAAAGATGACCGGAGAG
60
GTCAAACAGATCTGCGTGG
59
ATGGTATAGGCCTGACCAC
59
ACCTCTAGAGGCCTATACCA
59
AATGAGACTGTTGCATTGCC
60
ATCAATGTCAGGCTTTCCTC
58
CAGCAGAAAGGGATTATGGA
57
      尚未收录相关数据

PCBP2基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

PCBP2基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003723
F8VRH0 (UniProtKB)
IEA
GO:0003723
F8VTZ0 (UniProtKB)
IEA
GO:0003723
F8VXH9 (UniProtKB)
IEA
GO:0003723
F8VZX2 (UniProtKB)
IEA
GO:0003723
F8W0G4 (UniProtKB)
IEA
GO:0003723
F8W1G6 (UniProtKB)
IEA
GO:0003723
H3BND9 (UniProtKB)
IEA
GO:0003723
H3BRU6 (UniProtKB)
IEA
GO:0003723
H3BSP4 (UniProtKB)
IEA
GO:0003723
H3BSS4 (UniProtKB)
IEA
GO:0000398
Q15366 (UniProtKB)
TAS
GO:0003677
Q15366 (UniProtKB)
IEA
GO:0003723
Q15366 (UniProtKB)
IDA
GO:0005515
Q15366 (UniProtKB)
IPI
GO:0005515
Q15366 (UniProtKB)
IPI
GO:0005515
Q15366 (UniProtKB)
IPI
GO:0005515
Q15366 (UniProtKB)
IPI
GO:0005515
Q15366 (UniProtKB)
IPI
GO:0005634
Q15366 (UniProtKB)
IDA
GO:0005654
Q15366 (UniProtKB)
IDA
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005654
Q15366 (UniProtKB)
TAS
GO:0005737
Q15366 (UniProtKB)
IDA
GO:0005737
Q15366 (UniProtKB)
IDA
GO:0005829
Q15366 (UniProtKB)
TAS
GO:0005829
Q15366 (UniProtKB)
TAS
GO:0005925
Q15366 (UniProtKB)
IDA
GO:0010467
Q15366 (UniProtKB)
TAS
GO:0016020
Q15366 (UniProtKB)
IDA
GO:0016071
Q15366 (UniProtKB)
NAS
GO:0019899
Q15366 (UniProtKB)
IPI
GO:0030529
Q15366 (UniProtKB)
IEA
GO:0031625
Q15366 (UniProtKB)
IPI
GO:0031625
Q15366 (UniProtKB)
IPI
GO:0032480
Q15366 (UniProtKB)
TAS
GO:0039694
Q15366 (UniProtKB)
IDA
GO:0043161
Q15366 (UniProtKB)
IMP
GO:0044822
Q15366 (UniProtKB)
IDA
GO:0044822
Q15366 (UniProtKB)
IDA
GO:0045087
Q15366 (UniProtKB)
IEA
GO:0050687
Q15366 (UniProtKB)
IMP
GO:0051607
Q15366 (UniProtKB)
IEA
GO:0070062
Q15366 (UniProtKB)
IDA
GO:0070062
Q15366 (UniProtKB)
IDA
GO:0075522
Q15366 (UniProtKB)
IDA

可能调控 PCBP2基因的相关microRNA:     

Reactome

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Mouth Neoplasms 0.00272435 1 0 LHGDN
Cessation of life 0.00272435 1 0 LHGDN
Prostatic Neoplasms 0.00272435 1 0 LHGDN
Lip and Oral Cavity Carcinoma 0.000271442 1 0 BeFree
Malignant neoplasm of mouth 0.000271442 1 0 BeFree
Metastatic Prostate Carcinoma 0.000271442 1 0 BeFree
Hepatitis C 0.000271442 1 0 BeFree
Rabies (disorder) 0.000271442 1 0 BeFree
Blast Phase 0.000271442 1 0 BeFree
Squamous cell carcinoma 0.000271442 1 0 BeFree

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