NR1H4 (nuclear receptor subfamily 1 group H member 4)

symbol:
NR1H4
locus group:
protein-coding gene
location:
12q23.1
gene_family:
Nuclear hormone receptors
alias symbol:
FXR|RIP14|HRR1|HRR-1
alias name:
farnesoid X receptor|bile acid rec…
entrez id:
9971
ensembl gene id:
ENSG00000012504
ucsc gene id:
uc001thp.3
refseq accession:
NM_005123
hgnc_id:
HGNC:7967
approved reserved:
1999-09-17
12q23.1
基因染色体位置图

NR1H4基因编码法尼醇X受体(FXR),属于核受体超家族中的NR1亚家族。FXR主要在肝脏、肠道和肾脏中表达,作为胆汁酸的内源性受体,在胆汁酸代谢、脂质代谢和葡萄糖稳态中发挥核心调控作用。FXR通过与靶基因启动子区的FXRE反应元件结合,调控多种代谢相关基因的表达,包括胆汁酸合成限速酶CYP7A1、胆汁酸转运蛋白BSEP和脂蛋白代谢相关基因。当胆汁酸水平升高时,FXR被激活并抑制CYP7A1表达,形成负反馈调节环路。NR1H4基因突变可导致胆汁淤积性疾病如进行性家族性肝内胆汁淤积症5型(PFIC5),表现为严重胆汁淤积和肝衰竭。FXR功能异常还与非酒精性脂肪性肝病、胆结石、炎症性肠病和糖尿病等代谢性疾病密切相关。FXR过表达可增强胆汁酸排泄、改善胰岛素抵抗并具有抗炎作用,而敲除FXR的小鼠会出现胆汁酸代谢紊乱、高甘油三酯血症和自发肝肿瘤。FXR与同家族的LXR、PPAR等核受体存在交叉调控,共同构成复杂的代谢调控网络。该基因家族成员均具有典型的核受体结构域,通过配体激活后调控下游靶基因表达,在代谢平衡维持中起关键作用。目前FXR激动剂如奥贝胆酸已被批准用于原发性胆汁性胆管炎的治疗,并正在其他代谢性疾病中进行临床试验。

This gene encodes a ligand-activated transcription factor, which shares structural features in common with nuclear hormone receptor family, such as a DNA-binding domain that targets the receptor to specific DNA sequences, and a ligand-binding domain, which interacts directly with the ligand and contains a ligand-dependent transcriptional activation domain. This protein functions as a receptor for bile acids, and when bound to bile acids, regulates the expression of genes involved in bile acid synthesis and transport. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]

这个基因编码的配体激活的转录因子,这股在共同的结构特征与核激素受体家族,如靶向该受体对特定的DNA序列的DNA结合结构域和配体结合结构域,其直接与配体相互作用,并包含一个配体依赖性转录激活结构域。这种蛋白作为结合到胆汁酸为胆汁酸的受体,而当,调节参与胆汁酸合成和转运的基因的表达。编码不同同种型的可变剪接转录物变体已被用于这个基因说明。 [由RefSeq的,2011年8月提供]

NR1H4基因的碱基序列:[NCBI]
Loading Gene Browser...
NR1H4基因的碱基突变:           仅显示部分snp
rs35724       rs35725       rs35726       rs35727       rs35728       rs35729       rs35730       rs35731       rs35732       rs35733       rs35734       rs35735       rs35736       rs35737       rs35738       rs35739       rs919213      

NR1H4基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TTGTTATCCTGTCTCCAGATAGAC
59
GCACATCAAGAAGTGGCTC
59
AAAGGGCTTCTCAGACTCC
59
TAGGGACGAGTTCTTAAATGAG
57
TTTGCACAAGTTACTTGCC
57
CTGAGAAGCCCTTATAGGTG
57
TTTATTTGGGCTTCTCAGACTC
58
AGGGACGAGTTCTTAAATGAG
57
AAGCTACCAGGATTTCAGAC
57
AAGGAACATAGCTTCAACCG
58
TTTATTTGGGCTTCTCAGACTC
58
TAGGGACGAGTTCTTAAATGAG
57
TTTGCACAAGTTACTTGCCT
58
TGAGAAGCCCTTATAGGTGTG
59
GAAAGGGCTTCTCAGACTC
57
AGGGACGAGTTCTTAAATGAG
57
TTGCACAAGTTACTTGCCT
57
CTGAGAAGCCCTTATAGGTG
57
AAAGCTACCAGGATTTCAGAC
58
AGGAACATAGCTTCAACCG
57
转录因子
影响基因
影响类型
参考文献链接(PubMed)
EP300
NR1H4
Repression
IRF6
NR1H4
Unknown
IRF7
NR1H4
Unknown
NR0B1
NR1H4
Repression
NR1H4
ABCB11
Unknown
NR1H4
ABCB4
Activation
NR1H4
ABCC4
Repression
NR1H4
CYP7A1
Repression
NR1H4
DCN
Activation
NR1H4
EDN1
Repression

NR1H4基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

NR1H4基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003700
G8JLB0 (UniProtKB)
IEA
GO:0005634
G8JLB0 (UniProtKB)
IEA
GO:0006351
G8JLB0 (UniProtKB)
IEA
GO:0006355
G8JLB0 (UniProtKB)
IEA
GO:0008270
G8JLB0 (UniProtKB)
IEA
GO:0043401
G8JLB0 (UniProtKB)
IEA
GO:0043565
G8JLB0 (UniProtKB)
IEA
GO:0000122
Q96RI1 (UniProtKB)
ISS
GO:0000980
Q96RI1 (UniProtKB)
IDA
GO:0001077
Q96RI1 (UniProtKB)
IDA
GO:0001080
Q96RI1 (UniProtKB)
IC
GO:0001190
Q96RI1 (UniProtKB)
IDA
GO:0003700
Q96RI1 (UniProtKB)
TAS
GO:0003700
Q96RI1 (UniProtKB)
TAS
GO:0003705
Q96RI1 (UniProtKB)
IDA
GO:0003707
Q96RI1 (UniProtKB)
IEA
GO:0003713
Q96RI1 (UniProtKB)
TAS
GO:0003714
Q96RI1 (UniProtKB)
TAS
GO:0004879
Q96RI1 (UniProtKB)
ISS
GO:0004887
Q96RI1 (UniProtKB)
IEA
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005515
Q96RI1 (UniProtKB)
IPI
GO:0005654
Q96RI1 (UniProtKB)
TAS
GO:0005654
Q96RI1 (UniProtKB)
TAS
GO:0005654
Q96RI1 (UniProtKB)
TAS
GO:0005719
Q96RI1 (UniProtKB)
IDA
GO:0006109
Q96RI1 (UniProtKB)
IEA
GO:0006367
Q96RI1 (UniProtKB)
TAS
GO:0006954
Q96RI1 (UniProtKB)
IEA
GO:0007165
Q96RI1 (UniProtKB)
TAS
GO:0007219
Q96RI1 (UniProtKB)
IEA
GO:0008206
Q96RI1 (UniProtKB)
IEA
GO:0008206
Q96RI1 (UniProtKB)
IEA
GO:0008270
Q96RI1 (UniProtKB)
IEA
GO:0009749
Q96RI1 (UniProtKB)
IEA
GO:0010988
Q96RI1 (UniProtKB)
IDA
GO:0015721
Q96RI1 (UniProtKB)
TAS
GO:0016922
Q96RI1 (UniProtKB)
TAS
GO:0030522
Q96RI1 (UniProtKB)
ISS
GO:0032052
Q96RI1 (UniProtKB)
ISS
GO:0032052
Q96RI1 (UniProtKB)
TAS
GO:0032496
Q96RI1 (UniProtKB)
IEA
GO:0034142
Q96RI1 (UniProtKB)
IDA
GO:0034255
Q96RI1 (UniProtKB)
ISS
GO:0034971
Q96RI1 (UniProtKB)
IDA
GO:0035356
Q96RI1 (UniProtKB)
IDA
GO:0038181
Q96RI1 (UniProtKB)
IDA
GO:0038181
Q96RI1 (UniProtKB)
IDA
GO:0038181
Q96RI1 (UniProtKB)
IDA
GO:0038183
Q96RI1 (UniProtKB)
ISS
GO:0038185
Q96RI1 (UniProtKB)
IDA
GO:0042277
Q96RI1 (UniProtKB)
IEA
GO:0043066
Q96RI1 (UniProtKB)
IDA
GO:0043124
Q96RI1 (UniProtKB)
IDA
GO:0043401
Q96RI1 (UniProtKB)
IEA
GO:0043565
Q96RI1 (UniProtKB)
IDA
GO:0045087
Q96RI1 (UniProtKB)
IEA
GO:0045944
Q96RI1 (UniProtKB)
IMP
GO:0046965
Q96RI1 (UniProtKB)
IEA
GO:0048565
Q96RI1 (UniProtKB)
IEA
GO:0061178
Q96RI1 (UniProtKB)
IDA
GO:0070857
Q96RI1 (UniProtKB)
TAS
GO:0070858
Q96RI1 (UniProtKB)
IDA
GO:0071398
Q96RI1 (UniProtKB)
IDA
GO:0071417
Q96RI1 (UniProtKB)
ISS
GO:0072615
Q96RI1 (UniProtKB)
IDA
GO:0090181
Q96RI1 (UniProtKB)
TAS
GO:1902122
Q96RI1 (UniProtKB)
IDA
GO:1902714
Q96RI1 (UniProtKB)
IDA
GO:1904468
Q96RI1 (UniProtKB)
IDA
GO:2000213
Q96RI1 (UniProtKB)
ISS
GO:2001250
Q96RI1 (UniProtKB)
IEA

可能调控 NR1H4基因的相关microRNA:     

Reactome

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Liver carcinoma 0.201357209 6 0 BeFree_CTD_human_MGD
Liver diseases 0.125991584 5 0 BeFree_CTD_human_LHGDN
Cholestasis 0.124624443 10 0 BeFree_CTD_human_LHGDN
Liver neoplasms 0.120814326 6 0 BeFree_CTD_human
Crohn Disease 0.120542884 3 0 BeFree_CTD_human
Cholestasis of pregnancy 0.120542884 2 0 BeFree_ORPHANET
Intestinal Neoplasms 0.12 1 0 CTD_human
Drug-Induced Liver Injury 0.12 1 0 CTD_human
Extravasation of Diagnostic and Therapeutic Materials 0.12 1 0 CTD_human
Intrahepatic Cholestasis 0.087815732 3 0 GAD_LHGDN_RGD

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