MMP13 (matrix metallopeptidase 13)

symbol:
MMP13
locus group:
protein-coding gene
location:
11q22.2
gene_family:
Endogenous ligands|Matrix metallopeptidases
alias symbol:
CLG3
alias name:
collagenase 3
entrez id:
4322
ensembl gene id:
ENSG00000137745
ucsc gene id:
uc001phl.4
refseq accession:
NM_002427
hgnc_id:
HGNC:7159
approved reserved:
1994-11-20
11q22.2
基因染色体位置图

MMP13(基质金属蛋白酶13)属于基质金属蛋白酶(MMP)基因家族,该家族是一类依赖锌离子的内肽酶,主要功能是降解细胞外基质(ECM)成分,如胶原蛋白、弹性蛋白和蛋白聚糖,在组织重塑、伤口修复、炎症和肿瘤转移等生理和病理过程中起关键作用。MMP13也被称为胶原酶3,因其对II型胶原(软骨主要成分)的高效降解能力而闻名,在骨骼发育和关节软骨代谢中尤为重要。MMP13通常在软骨细胞、成骨细胞和某些肿瘤细胞中表达,其活性受组织抑制剂(TIMPs)严格调控。MMP13基因突变可能导致其功能异常,例如某些突变会增强其酶活性,与骨关节炎(OA)密切相关,因为过度降解软骨胶原会加速关节退化;而另一些突变可能导致功能丧失,影响骨骼发育或伤口愈合。MMP13过表达常见于关节炎、肿瘤(如乳腺癌、骨肉瘤)和慢性炎症性疾病,会促进ECM过度降解、肿瘤侵袭转移;而降低表达则可能延缓关节退化但抑制组织修复。MMP家族成员(如MMP1、MMP8、MMP13)均含有前肽区、催化区和铰链区等保守结构域,但底物偏好和组织分布不同。研究发现MMP13与IL-1β、TNF-α等炎性因子形成正反馈环路,加剧炎症反应,其抑制剂已成为骨关节炎药物的研究靶点。

Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases. The protein encoded by this gene cleaves type II collagen more efficiently than types I and III. It may be involved in articular cartilage turnover and cartilage pathophysiology associated with osteoarthritis. The gene is part of a cluster of MMP genes which localize to chromosome 11q22.3. [provided by RefSeq, Jul 2008]

基质金属蛋白酶(MMP)家族的蛋白质是参与细胞外基质的在正常生理过程,诸如胚胎发育,生殖和组织重塑,以及在疾病过程,如关节炎和转移的击穿。大多数的MMP的分泌为当由胞外蛋白酶裂解其中被激活无活性原蛋白。由该基因裂解II型胶原比更有效类型的第一和第三编码的蛋白质。它可能参与骨关节炎相关的关节软骨的营业额和软骨病理生理学。该基因是定位于染色体11q22.3基质金属蛋白酶的基因簇的一部分。 [由RefSeq的,2008年7月提供]

MMP13基因的碱基序列:[NCBI]
Loading Gene Browser...
MMP13基因的碱基突变:           仅显示部分snp
rs478927       rs554797       rs562736       rs565256       rs597315       rs627363       rs636229       rs640198       rs655044       rs1042840       rs1147071       rs1939529       rs2252070       rs2276093       rs2509110       rs3758853       rs3758854      

MMP13基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TGGTGATAAAGTAGATGCTGTC
58
AGATATAACCTGTAATCCCAGC
57
TGGGCCAAATTATGGAGGA
59
AGAAACAAGTTGTAGCCTTTGG
60
TGGGCCAAATTATGGAGGA
59
AGAAACAAGTTGTAGCCTTTGG
60
GTCTGGAGATATGATGATACTAACC
58
CACCAATTCCTGGGAAGTC
58
GAGTTCATTGTCGCAATCTG
58
AGATATAACCTGTAATCCCAGC
57
CTGGGCCAAATTATGGAGG
58
GAAACAAGTTGTAGCCTTTGG
58
AGATAAGTGCAGCTGTTCAC
58
TATCATCATATCTCCAGACCTGG
59
CTGGGCCAAATTATGGAGG
58
GAAACAAGTTGTAGCCTTTGG
58
AAGATAAGTGCAGCTGTTCAC
59
ATCATCATATCTCCAGACCTGG
59
GTTCATTGTCGCAATCTGAG
58
AGATATAACCTGTAATCCCAGC
57
转录因子
影响基因
影响类型
参考文献链接(PubMed)
CITED2
MMP13
Repression
ESR1
MMP13
Unknown
ETS1
MMP13
Activation
HDAC4
MMP13
Repression
HDAC9
MMP13
Activation
ING2
MMP13
Activation
JUN
MMP13
Activation
MAF
MMP13
Activation
NFKB1
MMP13
Activation
RELA
MMP13
Activation

MMP13基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

MMP13基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0004222
G5E971 (UniProtKB)
IEA
GO:0005509
G5E971 (UniProtKB)
IEA
GO:0005576
G5E971 (UniProtKB)
IEA
GO:0006508
G5E971 (UniProtKB)
IEA
GO:0008270
G5E971 (UniProtKB)
IEA
GO:0030574
G5E971 (UniProtKB)
IEA
GO:0031012
G5E971 (UniProtKB)
IEA
GO:0001554
P45452 (UniProtKB)
IEA
GO:0001649
P45452 (UniProtKB)
IEA
GO:0001666
P45452 (UniProtKB)
IEA
GO:0001958
P45452 (UniProtKB)
IEA
GO:0001958
P45452 (UniProtKB)
IEA
GO:0001968
P45452 (UniProtKB)
IEA
GO:0003417
P45452 (UniProtKB)
IEA
GO:0004222
P45452 (UniProtKB)
IDA
GO:0004222
P45452 (UniProtKB)
IDA
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0004252
P45452 (UniProtKB)
TAS
GO:0005509
P45452 (UniProtKB)
IDA
GO:0005518
P45452 (UniProtKB)
IDA
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005576
P45452 (UniProtKB)
TAS
GO:0005578
P45452 (UniProtKB)
IEA
GO:0005615
P45452 (UniProtKB)
IEA
GO:0005764
P45452 (UniProtKB)
IEA
GO:0005794
P45452 (UniProtKB)
IEA
GO:0006508
P45452 (UniProtKB)
IEA
GO:0006508
P45452 (UniProtKB)
IEA
GO:0007507
P45452 (UniProtKB)
IEA
GO:0007567
P45452 (UniProtKB)
IEA
GO:0008270
P45452 (UniProtKB)
IDA
GO:0009612
P45452 (UniProtKB)
IEA
GO:0022617
P45452 (UniProtKB)
IMP
GO:0022617
P45452 (UniProtKB)
IMP
GO:0022617
P45452 (UniProtKB)
TAS
GO:0030282
P45452 (UniProtKB)
IEA
GO:0030574
P45452 (UniProtKB)
IDA
GO:0030574
P45452 (UniProtKB)
IDA
GO:0030574
P45452 (UniProtKB)
TAS
GO:0035116
P45452 (UniProtKB)
IEA
GO:0042493
P45452 (UniProtKB)
IEA
GO:0043171
P45452 (UniProtKB)
IEA
GO:0043627
P45452 (UniProtKB)
IEA
GO:0044267
P45452 (UniProtKB)
IEA
GO:0044849
P45452 (UniProtKB)
IEA
GO:0046581
P45452 (UniProtKB)
IEA
GO:0048306
P45452 (UniProtKB)
IEA
GO:0050750
P45452 (UniProtKB)
IEA
GO:0060349
P45452 (UniProtKB)
IDA
GO:0071498
P45452 (UniProtKB)
IEA
GO:1904244
P45452 (UniProtKB)
IEA
GO:0004222
Q7Z5M0 (UniProtKB)
IEA
GO:0005509
Q7Z5M0 (UniProtKB)
IEA
GO:0005576
Q7Z5M0 (UniProtKB)
IEA
GO:0005581
Q7Z5M0 (UniProtKB)
IEA
GO:0006508
Q7Z5M0 (UniProtKB)
IEA
GO:0008270
Q7Z5M0 (UniProtKB)
IEA
GO:0030574
Q7Z5M0 (UniProtKB)
IEA
GO:0031012
Q7Z5M0 (UniProtKB)
IEA

可能调控 MMP13基因的相关microRNA:     

Reactome

BioGrid

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Spondyloepimetaphyseal Dysplasia, Missouri Type 0.48 2 2 CLINVAR_CTD_human_ORPHANET_UNIPROT
Metaphyseal chondrodysplasia Spahr type 0.36 1 3 CLINVAR_ORPHANET_UNIPROT
Liver Cirrhosis, Experimental 0.200271442 3 0 BeFree_CTD_human_RGD
Metaphyseal anadysplasia 0.120814326 3 0 BeFree_ORPHANET
Craniofacial Abnormalities 0.12 1 0 CTD_human
Prostatic Neoplasms 0.12 1 0 CTD_human
Degenerative polyarthritis 0.113175498 68 0 BeFree_LHGDN_RGD
Periodontitis 0.080271442 2 0 BeFree_RGD
Subarachnoid Hemorrhage 0.08 1 0 RGD
Gastric ulcer 0.08 1 0 RGD

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