LDLR (low density lipoprotein receptor)

symbol:
LDLR
locus group:
protein-coding gene
location:
19p13.2
gene_family:
Low density lipoprotein receptors
alias symbol:
LDLCQ2
alias name:
familial hypercholesterolemia
entrez id:
3949
ensembl gene id:
ENSG00000130164
ucsc gene id:
uc002mqk.5
refseq accession:
NM_000527
hgnc_id:
HGNC:6547
approved reserved:
1986-01-01
19p13.2
基因染色体位置图

LDLR(低密度脂蛋白受体)基因位于人类第19号染色体上,属于LDLR基因家族,该家族成员主要参与脂质代谢和胆固醇稳态调控。LDLR基因编码的蛋白质是一种细胞表面受体,主要负责识别并结合血液中的低密度脂蛋白(LDL),通过内吞作用将其摄入细胞内进行降解,从而调节血液中的胆固醇水平。LDLR主要在肝脏中高表达,但也存在于其他组织如肾上腺、肠道和大脑中。LDLR的功能对于维持正常的胆固醇代谢至关重要,其突变会导致家族性高胆固醇血症(FH),这是一种常染色体显性遗传病,表现为血液中LDL胆固醇水平显著升高,增加早发性动脉粥样硬化和冠心病的风险。常见的突变类型包括错义突变、无义突变和缺失突变,这些突变可能导致受体合成减少、运输障碍或功能缺陷。LDLR过表达可以增强LDL的清除能力,降低血液胆固醇水平,可能对心血管疾病有保护作用;而LDLR表达降低则会导致LDL清除障碍,引起高胆固醇血症。LDLR的表达受SREBP(固醇调节元件结合蛋白)途径调控,当细胞内胆固醇水平低时,SREBP被激活,促进LDLR的转录和表达。此外,PCSK9蛋白可以结合并促进LDLR的降解,因此PCSK9抑制剂被开发用于治疗高胆固醇血症。LDLR基因家族还包括VLDLR(极低密度脂蛋白受体)和LRP1(LDL受体相关蛋白1)等成员,它们具有相似的结构域(如配体结合重复序列和EGF前体同源域)并参与脂蛋白代谢和信号转导。研究LDLR不仅有助于理解胆固醇代谢的分子机制,还为开发降脂药物提供了重要靶点。

The low density lipoprotein receptor (LDLR) gene family consists of cell surface proteins involved in receptor-mediated endocytosis of specific ligands. Low density lipoprotein (LDL) is normally bound at the cell membrane and taken into the cell ending up in lysosomes where the protein is degraded and the cholesterol is made available for repression of microsomal enzyme 3-hydroxy-3-methylglutaryl coenzyme A (HMG CoA) reductase, the rate-limiting step in cholesterol synthesis. At the same time, a reciprocal stimulation of cholesterol ester synthesis takes place. Mutations in this gene cause the autosomal dominant disorder, familial hypercholesterolemia. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Sep 2010]

低密度脂蛋白受体(低密度脂蛋白受体)基因家族包括参与具体配体的受体介导的内吞作用的细胞表面蛋白。低密度脂蛋白(LDL)在细胞膜通常结合并考虑到在溶酶体结束了的细胞,其中所述蛋白被降解和胆固醇,并可用于微粒体酶3-羟基-3-甲基戊二酰辅酶A的压制(HMG辅酶)还原酶,胆固醇合成的限速步骤。与此同时,胆固醇酯合成的倒数刺激发生。在该基因的突变导致常染色体显性遗传疾病,家族性高胆固醇血症。选择性剪接结果在多个抄本变形。[由RefSeq的,2010年9月提供]

LDLR基因的碱基序列:[NCBI]
Loading Gene Browser...
LDLR基因的碱基突变:           仅显示部分snp
rs688       rs5925       rs5926       rs5927       rs5928       rs5929       rs5930       rs5931       rs5932       rs5933       rs14158       rs885765       rs892116       rs1003723       rs1010679       rs1061878       rs1433099      

LDLR基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TGCGTTAATGTGACACTCTG
58
GTTGCAGACTTTGTCCAGG
59
ATGCGAAGATATCGATGAGTG
58
AAGAAGAGGTAGGCGATGG
59
TCTATCAGAAGACCACAGAGGA
60
CTGACCATCTGTCTCGAGG
59
ATCTCCTACAAGTGGGTCTG
59
GGATTTGCAGGTGACAGAC
59
GTTTCCAGCTAGGACACAG
58
GTTTCTTTCGCATCTGTCG
57
TCTATCAGAAGACCACAGAGGA
60
CTGACCATCTGTCTCGAGG
59
GAGAATGATCTGCAGCACC
58
TAGATGTTGCTGTGGATCCA
58
CATGTACTGGACTGACTGGG
60
TACTTTGTCCTAGGGTGATGC
60
TCTATCAGAAGACCACAGAGG
58
CTCCAGACTGACCATCGAG
59
TCACCCTGGACAAAGTCTG
59
GACACTCATCGATATCGCAC
59
转录因子
影响基因
影响类型
参考文献链接(PubMed)
ATF3
LDLR
Repression
EGR1
LDLR
Activation
EGR1
LDLR
Unknown
HNF4A
LDLR
Activation
KLF13
LDLR
Repression
SP1
LDLR
Activation
SREBF1
LDLR
Activation
SREBF1
LDLR
Unknown
SREBF2
LDLR
Activation
YY1
LDLR
Unknown

LDLR基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

LDLR基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0005509
H0YM92 (UniProtKB)
IEA
GO:0005509
H0YMD1 (UniProtKB)
IEA
GO:0016021
H0YMD1 (UniProtKB)
IEA
GO:0005509
J3KMZ9 (UniProtKB)
IEA
GO:0016021
J3KMZ9 (UniProtKB)
IEA
GO:0001618
P01130 (UniProtKB)
IEA
GO:0001948
P01130 (UniProtKB)
IPI
GO:0002020
P01130 (UniProtKB)
IPI
GO:0002020
P01130 (UniProtKB)
IPI
GO:0002020
P01130 (UniProtKB)
IPI
GO:0004872
P01130 (UniProtKB)
IC
GO:0005041
P01130 (UniProtKB)
IDA
GO:0005041
P01130 (UniProtKB)
IDA
GO:0005509
P01130 (UniProtKB)
IEA
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005515
P01130 (UniProtKB)
IPI
GO:0005764
P01130 (UniProtKB)
IDA
GO:0005764
P01130 (UniProtKB)
IDA
GO:0005769
P01130 (UniProtKB)
IDA
GO:0005769
P01130 (UniProtKB)
IDA
GO:0005770
P01130 (UniProtKB)
IDA
GO:0005794
P01130 (UniProtKB)
IDA
GO:0005886
P01130 (UniProtKB)
TAS
GO:0005886
P01130 (UniProtKB)
TAS
GO:0005886
P01130 (UniProtKB)
TAS
GO:0005886
P01130 (UniProtKB)
TAS
GO:0005886
P01130 (UniProtKB)
TAS
GO:0005887
P01130 (UniProtKB)
TAS
GO:0005905
P01130 (UniProtKB)
IDA
GO:0006629
P01130 (UniProtKB)
TAS
GO:0006629
P01130 (UniProtKB)
TAS
GO:0006897
P01130 (UniProtKB)
TAS
GO:0006898
P01130 (UniProtKB)
TAS
GO:0006898
P01130 (UniProtKB)
TAS
GO:0006898
P01130 (UniProtKB)
TAS
GO:0006898
P01130 (UniProtKB)
TAS
GO:0006898
P01130 (UniProtKB)
TAS
GO:0006898
P01130 (UniProtKB)
TAS
GO:0006898
P01130 (UniProtKB)
TAS
GO:0008203
P01130 (UniProtKB)
IEA
GO:0009897
P01130 (UniProtKB)
IDA
GO:0009986
P01130 (UniProtKB)
ISS
GO:0009986
P01130 (UniProtKB)
IDA
GO:0010008
P01130 (UniProtKB)
TAS
GO:0010008
P01130 (UniProtKB)
TAS
GO:0010008
P01130 (UniProtKB)
TAS
GO:0010867
P01130 (UniProtKB)
ISS
GO:0010899
P01130 (UniProtKB)
ISS
GO:0015914
P01130 (UniProtKB)
ISS
GO:0016020
P01130 (UniProtKB)
IDA
GO:0016323
P01130 (UniProtKB)
ISS
GO:0016323
P01130 (UniProtKB)
ISS
GO:0030169
P01130 (UniProtKB)
IEA
GO:0030229
P01130 (UniProtKB)
IDA
GO:0030299
P01130 (UniProtKB)
IMP
GO:0030301
P01130 (UniProtKB)
IMP
GO:0030669
P01130 (UniProtKB)
TAS
GO:0030669
P01130 (UniProtKB)
TAS
GO:0030669
P01130 (UniProtKB)
TAS
GO:0032050
P01130 (UniProtKB)
TAS
GO:0034362
P01130 (UniProtKB)
IEA
GO:0034383
P01130 (UniProtKB)
IMP
GO:0042159
P01130 (UniProtKB)
IEA
GO:0042632
P01130 (UniProtKB)
IMP
GO:0042802
P01130 (UniProtKB)
IPI
GO:0043235
P01130 (UniProtKB)
IDA
GO:0045177
P01130 (UniProtKB)
ISS
GO:0046718
P01130 (UniProtKB)
IEA
GO:0070508
P01130 (UniProtKB)
ISS
GO:1990666
P01130 (UniProtKB)
IDA
GO:1990666
P01130 (UniProtKB)
IDA
GO:2000188
P01130 (UniProtKB)
IEA

可能调控 LDLR基因的相关microRNA:     

Reactome

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Hypercholesterolemia, Familial 0.462660056 712 65 BeFree_CLINVAR_CTD_human_GAD_LHGDN
Hypercholesterolemia 0.427528298 151 22 BeFree_CLINVAR_CTD_human_GAD_LHGDN_RGD
Hyperlipoproteinemia Type IIa 0.328957582 64 10 BeFree_CTD_human_MGD_UNIPROT
Atherosclerosis 0.177848251 141 1 BeFree_CTD_human_GAD_LHGDN
Coronary heart disease 0.166567245 84 4 BeFree_CTD_human_GAD_LHGDN
Cardiovascular Diseases 0.151899452 36 3 BeFree_GAD_GWASCAT_LHGDN
Coronary Artery Disease 0.148327101 47 3 BeFree_CTD_human_GAD_LHGDN
Obesity 0.136449672 20 0 BeFree_CTD_human_GAD
Hyperlipidemia 0.129620018 21 0 BeFree_CTD_human_GAD
Dyslipidemias 0.126905599 11 0 BeFree_CTD_human_GAD

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