LAMA4 (laminin subunit alpha 4)

symbol:
LAMA4
locus group:
protein-coding gene
location:
6q21
gene_family:
Laminins
alias symbol:
LAMA3
alias name:
None
entrez id:
3910
ensembl gene id:
ENSG00000112769
ucsc gene id:
uc003pvv.4
refseq accession:
NM_001105206
hgnc_id:
HGNC:6484
approved reserved:
1993-07-26
6q21
基因染色体位置图

Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the alpha chain isoform laminin, alpha 4. The domain structure of alpha 4 is similar to that of alpha 3, both of which resemble truncated versions of alpha 1 and alpha 2, in that approximately 1,200 residues at the N-terminus (domains IV, V and VI) have been lost. Laminin, alpha 4 contains the C-terminal G domain which distinguishes all alpha chains from the beta and gamma chains. The RNA analysis from adult and fetal tissues revealed developmental regulation of expression, however, the exact function of laminin, alpha 4 is not known. Tissue-specific utilization of alternative polyA-signal has been described in literature. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Aug 2011]

层粘连蛋白,一个家庭的细胞外基质糖蛋白,是基底膜的主要非胶原成分。他们已牵涉在多种生物学过程,包括细胞粘着,分化,迁移,信令,神经突向外生长和转移。层粘连蛋白组成的3个非同一链:层粘连蛋白α,β和γ(前身为A,B1和B2,分别)和他们形成了一个十字形结构,其中包括3短臂,每个由不同的链形成,一个长臂组成所有的3链。每个层粘连蛋白链是由不同的基因编码的蛋白质的多域。每条链的几种同工型已被描述。不同的α,β和γ链异构体结合以引起其通过阿拉伯数字在其发现的顺序指定不同异源层粘连蛋白同种型,即alpha1beta1gamma1异源是层粘连蛋白1的不同链和三聚体分子的生物功能在很大程度上是未知,但一些链已显示对于不同其组织分布,推测反映出体内多种功能。该基因编码的α链同种型层粘连蛋白,α-4.阿尔法4的域结构类似于阿尔法3,这两者的相似的α1和α2的截短形式,在N末端有大约1200的残基(域IV,V和VI)已经丢失。层粘连蛋白,α-4包含区别于β和γ链的所有的α链的C端G域。从成人和胎儿组织中的RNA的分析表明表达的发育调控,然而,层粘连蛋白的确切功能,α-4是未知的。替代多聚A信号的组织特异性利用率在文献中已有描述。在多个转录剪接变异体结果不同编码的亚型。 [由RefSeq的,2011年8月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
LAMA4基因的碱基突变:           仅显示部分snp
rs11495       rs717217       rs720179       rs725365       rs744006       rs763246       rs763247       rs764071       rs764196       rs764587       rs929124       rs956357       rs969138       rs969139       rs971402       rs971403       rs971404      

LAMA4基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
GATAGCCAAGAACTGTGCAG
59
ACTTATCACAGCCTGTAGGG
59
GATGCCGTACTGTAAGCTC
58
CTGAGCTCCCTTCAATGTC
58
GTACTGTAAGCTCCGTCCA
58
CTGAGCTCCCTTCAATGTC
57
CTGGGAGTAGAAGCTGCTG
60
CTCAAAGCCATTTCTCCGC
60
GACATAGAAGTTCGAACACCAG
59
TACTTCCATTGACCATCAGGAG
59
TACTTTACCAGGGTGGATAGAG
59
CTCATAAAGAGAAGTGTGGACC
59
GGACCTAACTGTGAAAGATGTG
59
GCAGTCACATTTCTTACAGGT
58
CCAACCATAAGCTGTGATAAGTG
60
TTTGCCTTCCTCGATGGAG
60
CCAACCATAAGCTGTGATAAGTG
60
TTTGCCTTCCTCGATGGAG
60
AGTTCAGTCAGTAGATAAGCAG
58
AGTTCATATCTTGTGGGTGAG
58
      尚未收录相关数据

LAMA4基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

LAMA4基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0001568
A0A0A0MQS9 (UniProtKB)
IEA
GO:0005102
A0A0A0MQS9 (UniProtKB)
IEA
GO:0005605
A0A0A0MQS9 (UniProtKB)
IEA
GO:0007155
A0A0A0MQS9 (UniProtKB)
IEA
GO:0030155
A0A0A0MQS9 (UniProtKB)
IEA
GO:0030334
A0A0A0MQS9 (UniProtKB)
IEA
GO:0045995
A0A0A0MQS9 (UniProtKB)
IEA
GO:0050873
A0A0A0MQS9 (UniProtKB)
IEA
GO:0005102
A0A0A0MTC7 (UniProtKB)
IEA
GO:0007155
A0A0A0MTC7 (UniProtKB)
IEA
GO:0030155
A0A0A0MTC7 (UniProtKB)
IEA
GO:0030334
A0A0A0MTC7 (UniProtKB)
IEA
GO:0045995
A0A0A0MTC7 (UniProtKB)
IEA
GO:0005102
H0Y351 (UniProtKB)
IEA
GO:0030155
H0Y351 (UniProtKB)
IEA
GO:0030334
H0Y351 (UniProtKB)
IEA
GO:0045995
H0Y351 (UniProtKB)
IEA
GO:0005102
H0YAQ5 (UniProtKB)
IEA
GO:0030155
H0YAQ5 (UniProtKB)
IEA
GO:0030334
H0YAQ5 (UniProtKB)
IEA
GO:0045995
H0YAQ5 (UniProtKB)
IEA
GO:0005102
Q16363 (UniProtKB)
IEA
GO:0005201
Q16363 (UniProtKB)
TAS
GO:0005515
Q16363 (UniProtKB)
IPI
GO:0005515
Q16363 (UniProtKB)
IPI
GO:0005576
Q16363 (UniProtKB)
TAS
GO:0005576
Q16363 (UniProtKB)
TAS
GO:0005576
Q16363 (UniProtKB)
TAS
GO:0005604
Q16363 (UniProtKB)
IDA
GO:0005605
Q16363 (UniProtKB)
TAS
GO:0007155
Q16363 (UniProtKB)
IEA
GO:0030155
Q16363 (UniProtKB)
IEA
GO:0030198
Q16363 (UniProtKB)
TAS
GO:0030334
Q16363 (UniProtKB)
IEA
GO:0045995
Q16363 (UniProtKB)
IEA
GO:0070062
Q16363 (UniProtKB)
IDA
GO:0070062
Q16363 (UniProtKB)
IDA
GO:0031012
Q16363 (UniProtKB)
ISS

可能调控 LAMA4基因的相关microRNA:     

Reactome

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
CARDIOMYOPATHY, DILATED, 1JJ 0.24 1 2 CLINVAR_UNIPROT
Spontaneous abortion 0.12 1 0 CTD_human
Junctional Epidermolysis Bullosa 0.003528744 13 0 BeFree
Glioma 0.00272435 1 0 LHGDN
Brain Neoplasms 0.00272435 1 0 LHGDN
Myocardial Infarction 0.002638474 1 1 BeFree_GAD
Atherosclerosis 0.002367032 1 0 GAD
Neoplasm Metastasis 0.000814326 3 0 BeFree
Adenocarcinoma 0.000271442 1 0 BeFree
Colorectal Carcinoma 0.000271442 1 0 BeFree

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