KDM2B (lysine demethylase 2B)

symbol:
KDM2B
locus group:
protein-coding gene
location:
12q24.31
gene_family:
Zinc fingers, CXXC-type|Lysine (K)-specific demethylases|F-box and leucine-rich repeat proteins
alias symbol:
PCCX2|CXXC2|Fbl10|JHDM1B
alias name:
jumonji C domain-containing histon…
entrez id:
84678
ensembl gene id:
ENSG00000089094
ucsc gene id:
uc058uhq.1
refseq accession:
NM_032590
hgnc_id:
HGNC:13610
approved reserved:
2004-01-06
12q24.31
基因染色体位置图

This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbls class. Multiple alternatively spliced transcript variants have been found for this gene, but the full-length nature of some variants has not been determined. [provided by RefSeq, Jul 2008]

该基因编码在F-box蛋白家族,其特征是一个约40个氨基酸基序,在F-盒的成员。在F-box蛋白组成四个亚基蛋白泛素连接酶复合体称为SCFS(SKP1-滞-F-箱)中的其中一个功能的磷酸化依赖泛素化。在F-box蛋白被分为3类:Fbws含WD-40结构域,含有Fbls富含亮氨酸的重复序列,以及含有任一不同的蛋白质 - 蛋白质相互作用的模块或没有可识别的图案Fbxs。由该基因编码的蛋白质属于Fbls类。多个可变剪接转录物变体已被发现对于此基因,但一些变体的全长性质尚未确定。 [由RefSeq的,2008年7月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
KDM2B基因的碱基突变:           仅显示部分snp
rs8462       rs13754       rs15876       rs750008       rs889970       rs951498       rs1058049       rs1064951       rs1110337       rs1138515       rs1177625       rs1549349       rs1612971       rs1626301       rs1706458       rs1706459       rs2037763      

KDM2B基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TACGAGATCGAGGACAGGA
59
AGCACATCTCATAGTAGAAGGG
59
CTAAAGGATGCCCAGATGC
58
GATTGTCCATCTGACCTGG
58
AAGACTCCAAAGAACCGGG
60
CATGTCCTTGCAGAAGTGG
59
TATCAACCTGCTCACTGCT
58
GTGACCTTATTGCAGTCAGAC
59
GCAAGTTTAACCTCATGCTC
58
CTGACTCCTTAATCTTAAGGCA
58
CTCTGGAAGAAGATTGCGC
59
TAGTTGAAATCTTTGCCCTCC
58
GATCTACGAGATCGAGGACAG
59
ATTTGGGCTGCACAAACAG
60
GGGAATTAAGATGCCTGACC
58
CTACTTCAGCATGTCTGAGC
58
AAGCTGCAGAGGTACTGTC
59
CACTCTGTTTGCCTGACAG
59
GAATTGAGCTGAAGCAGGG
59
ACACCAAAGAGTCTACAGGG
59
      尚未收录相关数据

KDM2B基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

KDM2B基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0008270
A0A0C4DGG3 (UniProtKB)
IEA
GO:0003677
F6SRV7 (UniProtKB)
IEA
GO:0008270
F6SRV7 (UniProtKB)
IEA
GO:0000122
Q8NHM5 (UniProtKB)
ISS
GO:0000979
Q8NHM5 (UniProtKB)
IEA
GO:0003677
Q8NHM5 (UniProtKB)
NAS
GO:0005515
Q8NHM5 (UniProtKB)
IPI
GO:0005515
Q8NHM5 (UniProtKB)
IPI
GO:0005515
Q8NHM5 (UniProtKB)
IPI
GO:0005634
Q8NHM5 (UniProtKB)
NAS
GO:0005654
Q8NHM5 (UniProtKB)
TAS
GO:0005654
Q8NHM5 (UniProtKB)
TAS
GO:0005730
Q8NHM5 (UniProtKB)
IEA
GO:0006351
Q8NHM5 (UniProtKB)
IEA
GO:0007283
Q8NHM5 (UniProtKB)
ISS
GO:0008270
Q8NHM5 (UniProtKB)
IEA
GO:0019843
Q8NHM5 (UniProtKB)
IEA
GO:0021555
Q8NHM5 (UniProtKB)
ISS
GO:0021592
Q8NHM5 (UniProtKB)
ISS
GO:0021670
Q8NHM5 (UniProtKB)
ISS
GO:0021678
Q8NHM5 (UniProtKB)
ISS
GO:0021993
Q8NHM5 (UniProtKB)
ISS
GO:0030307
Q8NHM5 (UniProtKB)
IEA
GO:0030900
Q8NHM5 (UniProtKB)
ISS
GO:0030901
Q8NHM5 (UniProtKB)
ISS
GO:0030902
Q8NHM5 (UniProtKB)
ISS
GO:0032452
Q8NHM5 (UniProtKB)
TAS
GO:0032452
Q8NHM5 (UniProtKB)
TAS
GO:0032452
Q8NHM5 (UniProtKB)
TAS
GO:0035518
Q8NHM5 (UniProtKB)
IDA
GO:0043524
Q8NHM5 (UniProtKB)
ISS
GO:0048596
Q8NHM5 (UniProtKB)
ISS
GO:0051864
Q8NHM5 (UniProtKB)
IEA
GO:0055114
Q8NHM5 (UniProtKB)
IEA
GO:0070544
Q8NHM5 (UniProtKB)
IEA
GO:1902459
Q8NHM5 (UniProtKB)
IEA
GO:2000178
Q8NHM5 (UniProtKB)
ISS
GO:0031519
Q8NHM5 (UniProtKB)
IDA

可能调控 KDM2B基因的相关microRNA:     

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Schizophrenia 0.12 1 0 CTD_human
T-Cell Lymphoma 0.08 1 0 RGD
Tobacco Use Disorder 0.002367032 1 0 GAD
Carcinogenesis 0.000542884 2 0 BeFree
Malignant neoplasm of breast 0.000542884 2 0 BeFree
Breast Carcinoma 0.000542884 2 0 BeFree
Neoplasm Metastasis 0.000271442 1 0 BeFree
CHARGE Syndrome 0.000271442 1 0 BeFree
Triple Negative Breast Neoplasms 0.000271442 1 0 BeFree
leukemia 0.000271442 1 0 BeFree

联系方式

山东省济南市 高新区 崇华路359号 三庆世纪财富中心C1115室

电话: 0531-88819269

E-mail: product@genelibs.com

微信公众号

关注微信订阅号,实时查看信息,关注医学生物学动态。