HMGB2 (high mobility group box 2)

symbol:
HMGB2
locus group:
protein-coding gene
location:
4q34.1
gene_family:
Canonical high mobility group
alias symbol:
None
alias name:
None
entrez id:
3148
ensembl gene id:
ENSG00000164104
ucsc gene id:
uc003itb.3
refseq accession:
NM_001130688
hgnc_id:
HGNC:5000
approved reserved:
1993-12-13
4q34.1
基因染色体位置图

HMGB2(高迁移率族蛋白B2)属于高迁移率族蛋白(HMGB)家族,该家族成员以高度保守的DNA结合结构域为特征,参与染色质结构调控和基因表达。HMGB2主要定位于细胞核,通过与DNA结合调节染色质动态和转录活性,在细胞增殖、分化及DNA修复中发挥关键作用。其表达具有组织特异性,在睾丸、淋巴组织和某些癌细胞中较高。HMGB2蛋白含有两个DNA结合域(HMG盒)和酸性C端尾,通过弯曲DNA促进转录因子结合。突变可能导致其核定位异常或DNA结合能力丧失,与不孕症、早衰和癌症发展相关。在癌症中,HMGB2过表达常见于胶质母细胞瘤、肝癌等,促进肿瘤细胞增殖和转移;而敲低表达可抑制癌细胞生长并增强化疗敏感性。HMGB2还参与炎症反应,当其从坏死细胞释放到胞外时作为损伤相关分子模式(DAMP)分子激活免疫受体如TLR4和RAGE,加剧炎症性疾病如关节炎和败血症。在生殖系统,HMGB2对精子发生至关重要,其缺失会导致精子发生障碍。该基因与家族成员HMGB1和HMGB3共享约80%序列相似性,均通过HMG盒与DNA相互作用,但表达模式和功能存在差异:HMGB1广泛表达且炎症作用更突出,而HMGB2主要在增殖活跃组织中表达。HMGB2表达水平变化会影响p53、NF-κB等信号通路,其过表达可能通过上调cyclin D1加速细胞周期,而低表达则可能引发细胞衰老。此外,HMGB2与端粒维持相关,其缺失会导致端粒功能障碍和基因组不稳定性。在神经系统中,HMGB2参与神经干细胞维持,水平异常可能影响神经再生。

This gene encodes a member of the non-histone chromosomal high mobility group protein family. The proteins of this family are chromatin-associated and ubiquitously distributed in the nucleus of higher eukaryotic cells. In vitro studies have demonstrated that this protein is able to efficiently bend DNA and form DNA circles. These studies suggest a role in facilitating cooperative interactions between cis-acting proteins by promoting DNA flexibility. This protein was also reported to be involved in the final ligation step in DNA end-joining processes of DNA double-strand breaks repair and V(D)J recombination. [provided by RefSeq, Jul 2008]

该基因编码的非组蛋白染色体高迁移率族蛋白家族的一个成员。这个家族的蛋白是染色质相关联,并普遍存在分布在较高的真核细胞的细胞核。体外研究已经表明,该蛋白质是能够有效地弯曲DNA和形式的DNA的社交圈。这些研究表明在促进DNA的灵活性便于顺式作用蛋白之间协同的相互作用的作用。另据报道该蛋白质是参与DNA双链断裂修复和V(D)J重组的DNA的末端连接过程的最后连接步骤。 [由RefSeq的,2008年7月提供]

HMGB2基因的碱基序列:[NCBI]
Loading Gene Browser...
HMGB2基因的碱基突变:           仅显示部分snp
rs3733476       rs6821844       rs6853427       rs7676013       rs10632983       rs11542247       rs11939608       rs17059297       rs17849374       rs33987506       rs73005353       rs73005356       rs73005357       rs73005358       rs73005359       rs73872570       rs75136761      

HMGB2基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TTACGTTCCTCCCAAAGGT
59
CAGGAAGAAGGCAGATGGT
59
TTACGTTCCTCCCAAAGGT
59
CAGGAAGAAGGCAGATGGT
59
TTACGTTCCTCCCAAAGGT
59
CAGGAAGAAGGCAGATGGT
59
AGAAGAAACACCCGGACTC
59
CTTTGCAGACATGGTCTTCC
59
AGAAGAAACACCCGGACTC
59
CTTTGCAGACATGGTCTTCC
59
TTACGTTCCTCCCAAAGGT
59
CAGGAAGAAGGCAGATGGT
59
TTACGTTCCTCCCAAAGGT
59
AGGAAGAAGGCAGATGGTG
59
GATGGAAGACCATGTCTGC
58
ATCTCCCTGTCATAGCGAG
58
TTACGTTCCTCCCAAAGGT
59
AGGAAGAAGGCAGATGGTG
59
GATGGAAGACCATGTCTGC
58
ATCTCCCTGTCATAGCGAG
58
转录因子
影响基因
影响类型
参考文献链接(PubMed)
HMGB2
GFI1B
Activation
HMGB2
TNF
Activation

HMGB2基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

HMGB2基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003677
D6R9A6 (UniProtKB)
IEA
GO:0005634
D6R9A6 (UniProtKB)
IEA
GO:0006355
D6R9A6 (UniProtKB)
IEA
GO:0007283
D6R9A6 (UniProtKB)
IEA
GO:0045595
D6R9A6 (UniProtKB)
IEA
GO:0000400
P26583 (UniProtKB)
ISS
GO:0000400
P26583 (UniProtKB)
ISS
GO:0000790
P26583 (UniProtKB)
ISS
GO:0000790
P26583 (UniProtKB)
ISS
GO:0000793
P26583 (UniProtKB)
IDA
GO:0001158
P26583 (UniProtKB)
ISS
GO:0001158
P26583 (UniProtKB)
ISS
GO:0001938
P26583 (UniProtKB)
IDA
GO:0002437
P26583 (UniProtKB)
ISS
GO:0002437
P26583 (UniProtKB)
ISS
GO:0003677
P26583 (UniProtKB)
IMP
GO:0003684
P26583 (UniProtKB)
IDA
GO:0003690
P26583 (UniProtKB)
ISS
GO:0003690
P26583 (UniProtKB)
ISS
GO:0003690
P26583 (UniProtKB)
ISS
GO:0003697
P26583 (UniProtKB)
ISS
GO:0003697
P26583 (UniProtKB)
ISS
GO:0003697
P26583 (UniProtKB)
ISS
GO:0003700
P26583 (UniProtKB)
IDA
GO:0005515
P26583 (UniProtKB)
IPI
GO:0005515
P26583 (UniProtKB)
IPI
GO:0005515
P26583 (UniProtKB)
IPI
GO:0005615
P26583 (UniProtKB)
IDA
GO:0005623
P26583 (UniProtKB)
IDA
GO:0005634
P26583 (UniProtKB)
IDA
GO:0005634
P26583 (UniProtKB)
IDA
GO:0005634
P26583 (UniProtKB)
IDA
GO:0005654
P26583 (UniProtKB)
TAS
GO:0005730
P26583 (UniProtKB)
IDA
GO:0005737
P26583 (UniProtKB)
IDA
GO:0006265
P26583 (UniProtKB)
ISS
GO:0006265
P26583 (UniProtKB)
ISS
GO:0006265
P26583 (UniProtKB)
ISS
GO:0006309
P26583 (UniProtKB)
TAS
GO:0006325
P26583 (UniProtKB)
NAS
GO:0006334
P26583 (UniProtKB)
NAS
GO:0006351
P26583 (UniProtKB)
IEA
GO:0006357
P26583 (UniProtKB)
IDA
GO:0007289
P26583 (UniProtKB)
IEA
GO:0008134
P26583 (UniProtKB)
ISS
GO:0008134
P26583 (UniProtKB)
ISS
GO:0008144
P26583 (UniProtKB)
ISS
GO:0008301
P26583 (UniProtKB)
IDA
GO:0008301
P26583 (UniProtKB)
IDA
GO:0008584
P26583 (UniProtKB)
IEA
GO:0019904
P26583 (UniProtKB)
IEA
GO:0032075
P26583 (UniProtKB)
IDA
GO:0032392
P26583 (UniProtKB)
ISS
GO:0032392
P26583 (UniProtKB)
ISS
GO:0032496
P26583 (UniProtKB)
ISS
GO:0032496
P26583 (UniProtKB)
ISS
GO:0032728
P26583 (UniProtKB)
IEA
GO:0033151
P26583 (UniProtKB)
ISS
GO:0042056
P26583 (UniProtKB)
IDA
GO:0042493
P26583 (UniProtKB)
ISS
GO:0043234
P26583 (UniProtKB)
IDA
GO:0043388
P26583 (UniProtKB)
IDA
GO:0044212
P26583 (UniProtKB)
IDA
GO:0044378
P26583 (UniProtKB)
ISS
GO:0044378
P26583 (UniProtKB)
ISS
GO:0044822
P26583 (UniProtKB)
IDA
GO:0044822
P26583 (UniProtKB)
IDA
GO:0045087
P26583 (UniProtKB)
IEA
GO:0045089
P26583 (UniProtKB)
IEA
GO:0045648
P26583 (UniProtKB)
IMP
GO:0045654
P26583 (UniProtKB)
IMP
GO:0045892
P26583 (UniProtKB)
IDA
GO:0045893
P26583 (UniProtKB)
IDA
GO:0045944
P26583 (UniProtKB)
IDA
GO:0045944
P26583 (UniProtKB)
IDA
GO:0048471
P26583 (UniProtKB)
IDA
GO:0048471
P26583 (UniProtKB)
IDA
GO:0048545
P26583 (UniProtKB)
IEA
GO:0050767
P26583 (UniProtKB)
ISS
GO:0050767
P26583 (UniProtKB)
ISS
GO:0050786
P26583 (UniProtKB)
IGI
GO:0050829
P26583 (UniProtKB)
IDA
GO:0050830
P26583 (UniProtKB)
IDA
GO:0050918
P26583 (UniProtKB)
IEA
GO:0051103
P26583 (UniProtKB)
ISS
GO:0060326
P26583 (UniProtKB)
IDA
GO:0071222
P26583 (UniProtKB)
IEP
GO:0072091
P26583 (UniProtKB)
ISS
GO:0072091
P26583 (UniProtKB)
ISS
GO:0097100
P26583 (UniProtKB)
ISS
GO:0097100
P26583 (UniProtKB)
ISS
GO:1902042
P26583 (UniProtKB)
IEA

可能调控 HMGB2基因的相关microRNA:     

Reactome

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Liver carcinoma 0.120271442 1 0 BeFree_CTD_human
Adenocarcinoma of lung (disorder) 0.12 1 0 CTD_human
Obesity 0.12 1 0 CTD_human
Male infertility 0.002367032 1 0 GAD
Oligospermia 0.002367032 1 0 GAD
Azoospermia 0.002367032 1 0 GAD
Degenerative polyarthritis 0.000542884 2 0 BeFree
Stomach Carcinoma 0.000271442 1 0 BeFree
Colorectal Carcinoma 0.000271442 1 0 BeFree
Carcinogenesis 0.000271442 1 0 BeFree

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