CRX (cone-rod homeobox)

symbol:
CRX
locus group:
protein-coding gene
location:
19q13.33
gene_family:
PRD class homeoboxes and pseudogenes
alias symbol:
CRD|LCA7|OTX3
alias name:
orthodenticle homeobox 3
entrez id:
1406
ensembl gene id:
ENSG00000105392
ucsc gene id:
uc002phq.5
refseq accession:
NM_000554
hgnc_id:
HGNC:2383
approved reserved:
1998-03-25
19q13.33
基因染色体位置图

CRX(Cone-Rod Homeobox)基因属于视网膜同源盒基因家族,主要表达于视网膜的光感受器细胞(视锥细胞和视杆细胞)中,对光感受器的发育和功能维持至关重要。该基因编码的CRX蛋白是一种转录因子,通过结合特定DNA序列调控下游靶基因的表达,这些靶基因涉及光感受器的分化、存活以及视觉信号转导相关蛋白的合成。CRX基因的突变可导致多种视网膜疾病,如视锥-视杆细胞营养不良(CORD)、莱伯先天性黑蒙(LCA)和视网膜色素变性(RP),这些疾病表现为视力下降、夜盲或视野缺损。突变可能破坏CRX的DNA结合能力或转录激活功能,进而影响光感受器的正常发育和功能。CRX基因过表达可能干扰视网膜细胞的分化平衡,导致异常细胞增殖或功能障碍;而表达降低则可能引发光感受器退化或凋亡。CRX与视网膜其他转录因子(如NRL和NR2E3)协同作用,共同调控光感受器特异性基因网络。该基因属于OTX/CRX基因家族,其成员均含有同源盒结构域,在神经系统发育中发挥关键作用,尤其在感光器官的演化中高度保守。研究CRX不仅有助于理解视网膜疾病的分子机制,也为基因治疗提供潜在靶点,例如通过基因编辑或病毒载体递送正常CRX基因治疗相关遗传性眼病。

The protein encoded by this gene is a photoreceptor-specific transcription factor which plays a role in the differentiation of photoreceptor cells. This homeodomain protein is necessary for the maintenance of normal cone and rod function. Mutations in this gene are associated with photoreceptor degeneration, Leber congenital amaurosis type III and the autosomal dominant cone-rod dystrophy 2. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some variants has not been determined. [provided by RefSeq, Jul 2008]

由该基因编码的蛋白质是一种起着感光细胞的分化作用的特定光感受器的转录因子。此同源蛋白是必要的维护正常锥体和杆的功能。在这种基因突变与光感受器变性,莱伯先天性黑朦III型和常染色体显性遗传锥 - 视杆营养不良2.几个这种基因的可变剪接转录物变体已有描述相关联,但某些变体的全长性质尚未确定。 [由RefSeq的,2008年7月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
CRX基因的碱基突变:           仅显示部分snp
rs1862482       rs1862483       rs1862484       rs1974815       rs2340995       rs2340996       rs2340997       rs2879910       rs3223021       rs3745752       rs3760817       rs3760818       rs3760819       rs3834630       rs3834631       rs3848536       rs3848537      

CRX基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
CTGTCCTGATTCCTCAGCC
59
GCGTTGACAGAATAGTGGG
58
CACTATTCTGTCAACGCCT
57
GAACCAAACTTGGGTAGGG
58
AGTACCCAGACGTCTATGC
58
TTCTTGAACCAAACCTGAACC
59
GTCCTGATTCCTCAGCCAG
59
GGCGTTGACAGAATAGTGG
58
AGTACCCAGACGTCTATGC
58
TCTTGAACCAAACCTGAACC
58
CTATTCTGTCAACGCCTTGG
59
TTGAACCAAACTTGGGTAGG
58
TATTCTGTCAACGCCTTGG
57
TTGAACCAAACTTGGGTAGG
58
GTCCTGATTCCTCAGCCAG
59
GCGTTGACAGAATAGTGGG
58
GTACCCAGACGTCTATGCC
59
TTCTTGAACCAAACCTGAACC
59
转录因子
影响基因
影响类型
参考文献链接(PubMed)
CRX
BEST1
Activation
CRX
NR2E3
Activation
CRX
RBP3
Activation
CRX
RBP3
Repression
CRX
RBP3
Unknown
CRX
RHO
Repression
CRX
RS1
Activation
TFAP2A
CRX
Unknown

CRX基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

CRX基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003677
H3BUU7 (UniProtKB)
IEA
GO:0003700
H3BUU7 (UniProtKB)
IEA
GO:0006355
H3BUU7 (UniProtKB)
IEA
GO:0007601
H3BUU7 (UniProtKB)
IEA
GO:0007623
H3BUU7 (UniProtKB)
IEA
GO:0000978
O43186 (UniProtKB)
IDA
GO:0001077
O43186 (UniProtKB)
IDA
GO:0003700
O43186 (UniProtKB)
ISS
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005515
O43186 (UniProtKB)
IPI
GO:0005634
O43186 (UniProtKB)
ISS
GO:0006355
O43186 (UniProtKB)
ISS
GO:0006366
O43186 (UniProtKB)
IEA
GO:0007601
O43186 (UniProtKB)
IEA
GO:0007623
O43186 (UniProtKB)
IEA
GO:0009887
O43186 (UniProtKB)
TAS
GO:0035257
O43186 (UniProtKB)
ISS
GO:0043522
O43186 (UniProtKB)
IPI
GO:0045944
O43186 (UniProtKB)
IDA
GO:0046534
O43186 (UniProtKB)
IEA
GO:0050896
O43186 (UniProtKB)
IEA

可能调控 CRX基因的相关microRNA:     

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Retinitis Pigmentosa 0.489153079 27 9 BeFree_CLINVAR_CTD_human_GAD_ORPHANET_UNIPROT
LEBER CONGENITAL AMAUROSIS 7 0.32 2 2 CLINVAR_MGD_UNIPROT
Leber Congenital Amaurosis 0.24434307 17 1 BeFree_CTD_human_ORPHANET
Retinal Degeneration 0.121628651 7 0 BeFree_CTD_human
Blind Vision 0.007815732 3 0 GAD_LHGDN
Retinal Diseases 0.004538567 9 0 BeFree_GAD
Optic Atrophy, Hereditary, Leber 0.002367032 1 0 GAD
Retinoblastoma 0.001628651 6 0 BeFree
Severe visual impairment 0.000542884 2 1 BeFree
Photoreceptor degeneration 0.000542884 2 1 BeFree

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