CD40 (CD40 molecule)

symbol:
CD40
locus group:
protein-coding gene
location:
20q13.12
gene_family:
CD molecules|Tumor necrosis factor receptor superfamily
alias symbol:
p50|Bp50
alias name:
None
entrez id:
958
ensembl gene id:
ENSG00000101017
ucsc gene id:
uc002xrg.2
refseq accession:
NM_001250
hgnc_id:
HGNC:11919
approved reserved:
1993-08-27
20q13.12
基因染色体位置图

CD40是一种位于细胞表面的受体蛋白,属于肿瘤坏死因子受体超家族(TNFRSF),其基因位于人类第20号染色体上。它的主要功能是通过与配体CD40L(CD154)结合,激活免疫细胞(如B细胞、树突细胞和巨噬细胞)的信号通路,从而调节体液免疫和细胞免疫应答。CD40-CD40L相互作用能促进B细胞增殖、抗体类别转换(class switch recombination)和体细胞高频突变(somatic hypermutation),这对产生高亲和力抗体至关重要。CD40还在T细胞活化、抗原呈递细胞的成熟以及炎症反应中起关键作用。若CD40基因发生功能丧失性突变(loss-of-function mutation),可能导致免疫缺陷疾病,如高IgM综合征(HIGM),其特征是IgG、IgA和IgE抗体水平低下,而IgM水平正常或升高,患者易受反复感染。相反,CD40的过度表达可能与自身免疫性疾病(如系统性红斑狼疮)或某些B细胞淋巴瘤相关,因其持续激活免疫反应可能导致异常增殖或自身抗体产生。CD40也参与动脉粥样硬化等炎症性疾病,其信号通路促进血管内皮细胞的炎症因子释放。在基因家族层面,TNFRSF成员均含有富含半胱氨酸的胞外结构域,并通过激活NF-κB、MAPK等通路调控细胞存活、分化和炎症。若CD40表达下调,可能削弱免疫应答,增加感染风险;而过表达可能引发过度炎症或自身免疫反应。该基因也是癌症免疫治疗的靶点之一,例如CD40激动剂被用于增强抗肿瘤免疫。专业术语解释:抗体类别转换指B细胞改变抗体类型(如从IgM转为IgG)的过程;体细胞高频突变是B细胞在生发中心中抗体基因随机突变以优化抗原结合力的机制;NF-κB和MAPK是调控基因表达和细胞反应的信号分子通路。

This gene is a member of the TNF-receptor superfamily. The encoded protein is a receptor on antigen-presenting cells of the immune system and is essential for mediating a broad variety of immune and inflammatory responses including T cell-dependent immunoglobulin class switching, memory B cell development, and germinal center formation. AT-hook transcription factor AKNA is reported to coordinately regulate the expression of this receptor and its ligand, which may be important for homotypic cell interactions. Adaptor protein TNFR2 interacts with this receptor and serves as a mediator of the signal transduction. The interaction of this receptor and its ligand is found to be necessary for amyloid-beta-induced microglial activation, and thus is thought to be an early event in Alzheimer disease pathogenesis. Mutations affecting this gene are the cause of autosomal recessive hyper-IgM immunodeficiency type 3 (HIGM3). Multiple alternatively spliced transcript variants of this gene encoding distinct isoforms have been reported. [provided by RefSeq, Nov 2014]

该基因是TNF受体超家族的成员。所编码的蛋白质是免疫系统的抗原呈递细胞的受体并介导了各种各样的,包括T细胞依赖的免疫球蛋白类别转换,记忆B细胞发育,和生发中心的形成的免疫和炎症反应是必不可少的。 AT-钩转录因子AKNA报告给协调调节该受体和其配体,其可以是用于同型细胞的相互作用重要的表达。适配器蛋白TNFR2这种受体相互作用,并作为信号转导的调解人。该受体和其配体的相互作用被发现是必需的淀粉样蛋白β诱导的小神经胶质细胞活化,并因此被认为是阿尔茨海默病发病的早期事件。影响该基因突变是常染色体隐性遗传高IgM免疫缺陷型3(HIGM3)的原因。已经报道了这个基因编码不同同种型的多个可变剪接转录物变体。 [由RefSeq的,2014年11月提供]

CD40基因的碱基序列:[NCBI]
Loading Gene Browser...
CD40基因的碱基突变:           仅显示部分snp
rs745307       rs752118       rs1535045       rs1800686       rs1883832       rs3746821       rs3765456       rs3765457       rs3765458       rs3765459       rs4239702       rs4810485       rs4812998       rs4812999       rs4813000       rs6017738       rs6032666      

CD40基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TGATGTTGTCTGTGGTCCC
60
CAAGAGGATGGCAAACAGG
59
CAAGCAGATTGCTGTGAGAC
60
CATTGTCCAGGACTCACCA
59
CAAGCAGATTGCTACAGGG
59
AAAGCAGATGACACATTGGA
58
AAACAGACACCATCTGCAC
58
TTTGGTCTCACAGCAATCTG
59
TCTGCACCTGTGAAGAAGG
60
GCTGGCAGATGTCAATCTG
59
AAGTGTAGTAATCAAGGTCCC
57
TAAAGACCAGCACCAAGAG
57
GTTTCTGATACCATCTGCGA
58
TTTGGTCTCACAGCTTGTC
58
CAAGCAGATTGCTACAGGG
59
AAAGCAGATGACACATTGGA
58
TGATGTTGTCTGTGGTCCC
60
AAGAGGATGGCAAACAGGA
59
CAAGCAGATTGCTGTGAGAC
60
ATTGTCCAGGACTCACCAC
59
转录因子
影响基因
影响类型
参考文献链接(PubMed)
IRF1
CD40
Activation
NFKB1
CD40
Activation
NFKB1
CD40
Unknown
NFKBIA
CD40
Repression
NR3C2
CD40
Activation
RELA
CD40
Activation
RELA
CD40
Unknown
RELB
CD40
Unknown
SPI1
CD40
Activation
SPIB
CD40
Activation

CD40基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

CD40基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0001934
P25942 (UniProtKB)
IMP
GO:0002768
P25942 (UniProtKB)
IEA
GO:0003823
P25942 (UniProtKB)
IEA
GO:0004871
P25942 (UniProtKB)
TAS
GO:0004872
P25942 (UniProtKB)
TAS
GO:0005031
P25942 (UniProtKB)
IBA
GO:0005515
P25942 (UniProtKB)
IPI
GO:0005515
P25942 (UniProtKB)
IPI
GO:0005515
P25942 (UniProtKB)
IPI
GO:0005515
P25942 (UniProtKB)
IPI
GO:0005515
P25942 (UniProtKB)
IPI
GO:0005515
P25942 (UniProtKB)
IPI
GO:0005615
P25942 (UniProtKB)
IEA
GO:0005737
P25942 (UniProtKB)
IEA
GO:0005886
P25942 (UniProtKB)
ISS
GO:0005886
P25942 (UniProtKB)
TAS
GO:0005886
P25942 (UniProtKB)
TAS
GO:0005886
P25942 (UniProtKB)
TAS
GO:0005886
P25942 (UniProtKB)
TAS
GO:0005886
P25942 (UniProtKB)
TAS
GO:0005887
P25942 (UniProtKB)
TAS
GO:0006461
P25942 (UniProtKB)
TAS
GO:0006874
P25942 (UniProtKB)
IMP
GO:0006954
P25942 (UniProtKB)
IEA
GO:0006955
P25942 (UniProtKB)
IBA
GO:0007275
P25942 (UniProtKB)
IBA
GO:0009897
P25942 (UniProtKB)
IEA
GO:0009986
P25942 (UniProtKB)
IDA
GO:0019899
P25942 (UniProtKB)
IPI
GO:0030168
P25942 (UniProtKB)
NAS
GO:0030890
P25942 (UniProtKB)
IEA
GO:0031625
P25942 (UniProtKB)
IPI
GO:0031625
P25942 (UniProtKB)
IPI
GO:0032496
P25942 (UniProtKB)
IBA
GO:0032735
P25942 (UniProtKB)
IEA
GO:0033209
P25942 (UniProtKB)
TAS
GO:0033209
P25942 (UniProtKB)
TAS
GO:0035631
P25942 (UniProtKB)
ISS
GO:0042100
P25942 (UniProtKB)
NAS
GO:0042127
P25942 (UniProtKB)
IBA
GO:0042511
P25942 (UniProtKB)
IMP
GO:0042832
P25942 (UniProtKB)
IEA
GO:0043123
P25942 (UniProtKB)
IEP
GO:0043231
P25942 (UniProtKB)
IEA
GO:0043406
P25942 (UniProtKB)
IMP
GO:0043491
P25942 (UniProtKB)
IEA
GO:0043547
P25942 (UniProtKB)
IMP
GO:0045944
P25942 (UniProtKB)
IMP
GO:0048304
P25942 (UniProtKB)
IEA
GO:0050776
P25942 (UniProtKB)
TAS
GO:0051023
P25942 (UniProtKB)
IEA
GO:0051092
P25942 (UniProtKB)
IMP
GO:0051607
P25942 (UniProtKB)
IEA
GO:0070062
P25942 (UniProtKB)
IDA
GO:0071222
P25942 (UniProtKB)
IEA
GO:0071260
P25942 (UniProtKB)
IEP
GO:0090037
P25942 (UniProtKB)
IMP
GO:0097190
P25942 (UniProtKB)
IBA
GO:2000353
P25942 (UniProtKB)
IDA

可能调控 CD40基因的相关microRNA:     

Reactome

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Hyper-IgM Immunodeficiency Syndrome, Type 3 0.36 1 1 CLINVAR_ORPHANET_UNIPROT
Rheumatoid Arthritis 0.277186332 29 10 BeFree_CTD_human_GAD_GWASCAT_LHGDN
Multiple Sclerosis 0.131911105 11 1 BeFree_CTD_human_GAD
Hyperimmunoglobulin M syndrome 0.126524536 14 0 BeFree_CTD_human_LHGDN
Mucocutaneous Lymph Node Syndrome 0.126091273 7 1 BeFree_CTD_human_GAD
Hepatitis B, Chronic 0.120542884 2 1 BeFree_GWASCAT
Mammary Neoplasms 0.120271442 2 0 BeFree_CTD_human
Status Epilepticus 0.12 1 0 CTD_human
Atherosclerosis 0.091801484 21 2 BeFree_GAD_LHGDN_RGD
Asthma 0.091539974 7 0 BeFree_GAD_LHGDN_RGD

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