CACNA1A (calcium voltage-gated channel subunit alpha1 A)

symbol:
CACNA1A
locus group:
protein-coding gene
location:
19p13.13
gene_family:
Calcium channels, voltage-dependent
alias symbol:
Cav2.1|EA2|APCA|HPCA|FHM
alias name:
None
entrez id:
773
ensembl gene id:
ENSG00000141837
ucsc gene id:
uc002mwy.5
refseq accession:
NM_000068
hgnc_id:
HGNC:1388
approved reserved:
1996-06-18
19p13.13
基因染色体位置图

CACNA1A基因编码电压门控钙通道的α1A亚基(Cav2.1),属于钙离子通道基因家族(voltage-gated calcium channels, VGCCs)。该家族通过调控钙离子内流参与神经递质释放、肌肉收缩等重要生理过程。CACNA1A主要在神经系统高表达,尤其小脑皮层和突触前膜,其表达的P/Q型钙通道通过介导动作电位触发的钙内流调控神经递质释放。该基因突变可导致多种神经系统疾病:错义突变引发家族性偏瘫型偏头痛(FHM1),表现为剧烈头痛伴运动障碍;C末端扩增突变引起脊髓小脑共济失调6型(SCA6),导致进行性运动协调障碍;无义突变则与发作性共济失调2型(EA2)相关,表现为间歇性平衡失调。基因过表达可能增强神经元兴奋性,但会破坏钙稳态引发兴奋毒性;表达降低则损害突触传递,导致运动障碍。该基因与CACNA1B、CACNA1C等同属VGCC家族,成员均含4个同源结构域,每个结构域含6个跨膜片段,通过电压敏感区域感知膜电位变化。值得注意的是,CACNA1A突变产生的通道功能异常具有双向性:功能增益型突变(如FHM1)增加钙电流,而功能丧失型突变(如EA2)减少电流,这种矛盾现象源于不同突变对通道门控特性的差异化影响。最新研究发现其与癫痫、阿尔茨海默病也存在关联,可能通过影响β淀粉样蛋白生成途径发挥作用。

Voltage-dependent calcium channels mediate the entry of calcium ions into excitable cells, and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, and gene expression. Calcium channels are multisubunit complexes composed of alpha-1, beta, alpha-2/delta, and gamma subunits. The channel activity is directed by the pore-forming alpha-1 subunit, whereas, the others act as auxiliary subunits regulating this activity. The distinctive properties of the calcium channel types are related primarily to the expression of a variety of alpha-1 isoforms, alpha-1A, B, C, D, E, and S. This gene encodes the alpha-1A subunit, which is predominantly expressed in neuronal tissue. Mutations in this gene are associated with 2 neurologic disorders, familial hemiplegic migraine and episodic ataxia 2. This gene also exhibits polymorphic variation due to (CAG)n-repeats. Multiple transcript variants encoding different isoforms have been found for this gene. In one set of transcript variants, the (CAG)n-repeats occur in the 3' UTR, and are not associated with any disease. But in another set of variants, an insertion extends the coding region to include the (CAG)n-repeats which encode a polyglutamine tract. Expansion of the (CAG)n-repeats from the normal 4-16 to 21-28 in the coding region is associated with spinocerebellar ataxia 6. [provided by RefSeq, Mar 2010]

电压依赖性钙通道介导的钙离子进入可兴奋细胞,并也参与多种钙依赖性过程,包括肌肉收缩,激素或神经递质释放和基因表达的。钙通道是α-1,β,α-2 /三角,和γ亚单位组成多亚基复合物。信道活动由孔形成的α-1亚单位指示,而,其他的作为辅助亚基调节此活动。钙通道类型的独特性质主要涉及多种α-1同种型,α-1A,B,C,D,E,和S这种基因的表达编码α-1A亚基,这主要是在神经组织??中表达。在这种基因突变与2神经系统疾病,家族性偏瘫性偏头痛和发作性共济失调2,该基因也显示出多晶型的变化,由于(CAG)正 - 重复相关联。已发现该基因编码不同亚型的多个抄本变形。在一组转录变体中,(CAG)的正 - 重复发生在3‘端非编码区,并且不与任何疾病相关。但在另一组变体,插入延伸的编码区,以包括(CAG)正 - 重复序列,其编码一个多聚谷氨酰胺道。在(CAG)的扩展,从正常的4-1正重复6中的编码区21-28与[由RefSeq的,2010年3月提供]脊髓小脑性共济失调6相关联

CACNA1A基因的碱基序列:[NCBI]
Loading Gene Browser...
CACNA1A基因的碱基突变:           仅显示部分snp
rs1742       rs15999       rs16003       rs16004       rs16005       rs16006       rs16007       rs16008       rs16009       rs16010       rs16011       rs16012       rs16013       rs16014       rs16015       rs16016       rs16017      

CACNA1A基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
ACCAATGAGGAAGCTACCA
58
GTCCAGTGTTCTCTGTTTCC
59
TCAAGATTGCCAAGGGAGG
60
GACAGATTGGGCCAAATCG
59
CTTTGAGTACCTCACCCGAG
60
AATTGCTGTGACCAAGCTG
59
TTAAATCCCTCCGAGTCCTC
59
AGTCAAACACAGCCTTGAG
58
GAGATGGCTACTCCGACAG
59
TCTGAGATGGTCTGGTTCTC
59
CTTCTCTGGACCTTTGTGC
59
TTACCAAACACCTGCATCC
58
TCCCTTTGATGGAGCTCTG
59
TATCAGCCAGCTGATCCTC
59
TCAACATCGTCTTCACCTC
57
CGCGGAAATAATTCAGAATCC
58
ACCGAGATGTCATCTTGGC
60
CATCCTCTGGTAGCTTCTCC
59
CATCCTGTTTGCAGTGCTG
60
GGCATCGTTGCTATTGTAGAG
59
      尚未收录相关数据

CACNA1A基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

CACNA1A基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0005245
A0A087WW63 (UniProtKB)
IEA
GO:0005891
A0A087WW63 (UniProtKB)
IEA
GO:0034765
A0A087WW63 (UniProtKB)
IEA
GO:0070588
A0A087WW63 (UniProtKB)
IEA
GO:0005244
I3L2V5 (UniProtKB)
IEA
GO:0016021
I3L2V5 (UniProtKB)
IEA
GO:0034220
I3L2V5 (UniProtKB)
IEA
GO:0034765
I3L2V5 (UniProtKB)
IEA
GO:0005245
I3L391 (UniProtKB)
IEA
GO:0005891
I3L391 (UniProtKB)
IEA
GO:0034765
I3L391 (UniProtKB)
IEA
GO:0070588
I3L391 (UniProtKB)
IEA
GO:0005245
K7EKF7 (UniProtKB)
IEA
GO:0005891
K7EKF7 (UniProtKB)
IEA
GO:0034765
K7EKF7 (UniProtKB)
IEA
GO:0070588
K7EKF7 (UniProtKB)
IEA
GO:0005245
K7EQ95 (UniProtKB)
IEA
GO:0005891
K7EQ95 (UniProtKB)
IEA
GO:0034765
K7EQ95 (UniProtKB)
IEA
GO:0070588
K7EQ95 (UniProtKB)
IEA
GO:0000096
O00555 (UniProtKB)
IEA
GO:0005245
O00555 (UniProtKB)
ISS
GO:0005245
O00555 (UniProtKB)
IDA
GO:0005245
O00555 (UniProtKB)
IDA
GO:0005245
O00555 (UniProtKB)
TAS
GO:0005262
O00555 (UniProtKB)
TAS
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005515
O00555 (UniProtKB)
IPI
GO:0005634
O00555 (UniProtKB)
IDA
GO:0005737
O00555 (UniProtKB)
IDA
GO:0005886
O00555 (UniProtKB)
IDA
GO:0005886
O00555 (UniProtKB)
TAS
GO:0005886
O00555 (UniProtKB)
TAS
GO:0005891
O00555 (UniProtKB)
IEA
GO:0006006
O00555 (UniProtKB)
IEA
GO:0007204
O00555 (UniProtKB)
ISS
GO:0007204
O00555 (UniProtKB)
IDA
GO:0007214
O00555 (UniProtKB)
IEA
GO:0007274
O00555 (UniProtKB)
IEA
GO:0007416
O00555 (UniProtKB)
IEA
GO:0007628
O00555 (UniProtKB)
IEA
GO:0008219
O00555 (UniProtKB)
IDA
GO:0008331
O00555 (UniProtKB)
IBA
GO:0014051
O00555 (UniProtKB)
IEA
GO:0014056
O00555 (UniProtKB)
IEA
GO:0016021
O00555 (UniProtKB)
NAS
GO:0016021
O00555 (UniProtKB)
TAS
GO:0016049
O00555 (UniProtKB)
IEA
GO:0017158
O00555 (UniProtKB)
IEA
GO:0019226
O00555 (UniProtKB)
IEA
GO:0019905
O00555 (UniProtKB)
IDA
GO:0021522
O00555 (UniProtKB)
IEA
GO:0021590
O00555 (UniProtKB)
IEA
GO:0021679
O00555 (UniProtKB)
IEA
GO:0021702
O00555 (UniProtKB)
IEA
GO:0021750
O00555 (UniProtKB)
IEA
GO:0030425
O00555 (UniProtKB)
IEA
GO:0030644
O00555 (UniProtKB)
IEA
GO:0032353
O00555 (UniProtKB)
IEA
GO:0034765
O00555 (UniProtKB)
IEA
GO:0035249
O00555 (UniProtKB)
IEA
GO:0042133
O00555 (UniProtKB)
IEA
GO:0042445
O00555 (UniProtKB)
IEA
GO:0042995
O00555 (UniProtKB)
IDA
GO:0043025
O00555 (UniProtKB)
IEA
GO:0043113
O00555 (UniProtKB)
IEA
GO:0043524
O00555 (UniProtKB)
IEA
GO:0046872
O00555 (UniProtKB)
IEA
GO:0048266
O00555 (UniProtKB)
IEA
GO:0048791
O00555 (UniProtKB)
IEA
GO:0048813
O00555 (UniProtKB)
IEA
GO:0050770
O00555 (UniProtKB)
IEA
GO:0050796
O00555 (UniProtKB)
TAS
GO:0050883
O00555 (UniProtKB)
IEA
GO:0050885
O00555 (UniProtKB)
IEA
GO:0051899
O00555 (UniProtKB)
TAS
GO:0060024
O00555 (UniProtKB)
IEA
GO:0070588
O00555 (UniProtKB)
IEA
GO:0086010
O00555 (UniProtKB)
IBA
GO:0098793
O00555 (UniProtKB)
IEA

可能调控 CACNA1A基因的相关microRNA:     

Reactome

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Episodic ataxia type 2 (disorder) 0.5751248 55 32 BeFree_CLINVAR_CTD_human_GAD_MGD_ORPHANET_UNIPROT
Spinocerebellar Ataxia Type 6 (disorder) 0.4551248 50 6 BeFree_CLINVAR_GAD_MGD_ORPHANET_UNIPROT
Hemiplegic migraine, familial type 1 0.331672 47 17 BeFree_CTD_human_MGD_UNIPROT
Exfoliation Syndrome 0.240271442 1 1 BeFree_CTD_human_GWASCAT
Absence Epilepsy 0.201628651 6 0 BeFree_CTD_human_RGD
Ataxia, Spinocerebellar 0.150157299 27 0 BeFree_CTD_human_GAD_LHGDN
Ataxia 0.142493457 38 2 BeFree_CTD_human_GAD_LHGDN
MIGRAINE, SPORADIC HEMIPLEGIC 0.121900093 7 2 BeFree_CLINVAR
Alternating hemiplegia of childhood 0.120814326 3 0 BeFree_ORPHANET
Epilepsy, Temporal Lobe 0.08 1 0 RGD

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