BCAR4 (breast cancer anti-estrogen resistance 4)

symbol:
BCAR4
locus group:
non-coding RNA
location:
16p13.13
gene_family:
alias symbol:
None
alias name:
None
entrez id:
400500
ensembl gene id:
ENSG00000262117
ucsc gene id:
uc059qxb.1
refseq accession:
NR_024049
hgnc_id:
HGNC:22170
approved reserved:
2006-05-09
16p13.13
基因染色体位置图

This gene produces a spliced long non-coding RNA (lncRNA) that has been implicated in breast cancer metastasis. It was originally identified in a screen for genes responsible for the development of resistance to anti-estrogens in breast cancer cells. It is thought that release of CCL21 enables this lncRNA to bind to the SNIP1 and PNUTS transcription factors, thereby activating a non-canonical GLI-dependent hedgehog signaling pathway that promotes cancer cell migration and invasion. A similar gene in cow expresses a protein in mature oocytes and preimplantation embryos. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Apr 2015]

该基因产生已在乳腺癌转移被牵连拼接长链非编码RNA(lncRNA)。它在对负责抗性的发展,以在乳腺癌细胞中的抗雌激素基因的屏幕最初被鉴定。据认为,CCL21的释放使此lncRNA绑定到SNIP1和PNUTS转录因子,从而激活一个非经典的GLI依赖性hedgehog信号传导途径,促进癌细胞的迁移和侵袭。在奶牛类似的基因表达成熟的卵母细胞和植入前胚胎的蛋白质。可变剪接转录物变体也已确定。 [由RefSeq的,2015年4月提供]

CCND1基因的碱基序列:[NCBI]
Loading Gene Browser...
BCAR4基因的碱基突变:           仅显示部分snp
rs718080       rs718081       rs1128835       rs1128837       rs2098338       rs4429311       rs4493057       rs4561483       rs4780403       rs4781155       rs4781156       rs4781157       rs4781158       rs6498250       rs7185565       rs7189510       rs7193470      

BCAR4基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
GTCAACTGAAAGCCAACCA
59
ATAAGGTCAGGAATAGTTTCCC
57
AACTGAAAGCCAACCAGGT
59
AACACGGATTCTCACAAGC
58
AACTGAAAGCCAACCAGGA
59
TGGATAGGTTGGTACATGGT
58
TCTGAATGTCTGCTTGTCAC
58
CAACAATGAGTCCCAGAATCAC
60
ATGAAATGGTCAACTGAAAGCC
60
GTTTGGATAGGTTGGTACATGG
59
CTGTACCAGGGTCTTGTCC
59
CTTGAACCCAGGAGATGGA
59
TTCTCCCTTGGGTCTTGTC
59
CTTGAACCCAGGAGATGGAG
60
GGTGAACCAAATGAAATGGTC
58
AATTCACTTCTCACAAGGAGAG
58
AAGTATCTGGGACTACAGCA
57
TCCATGGATAAGTTTGGATAGG
57
TCAACTGAAAGCCAACCAG
58
ATTACGCCATTGTATTCCAGC
59
      尚未收录相关数据

BCAR4基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

BCAR4基因的本体(GO)信息:

可能调控 BCAR4基因的相关microRNA:     

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Mammary Neoplasms 0.123267234 3 0 BeFree_CTD_human_LHGDN
Breast Carcinoma 0.001357209 5 0 BeFree
Malignant neoplasm of breast 0.001357209 5 0 BeFree
Neoplasm Metastasis 0.000542884 2 0 BeFree

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