APOBEC3A (apolipoprotein B mRNA editing enzyme catalytic subunit 3A)

symbol:
APOBEC3A
locus group:
protein-coding gene
location:
22q13.1
gene_family:
Apolipoprotein B mRNA editing enzyme, catalytic polypeptides
alias symbol:
ARP3|PHRBN
alias name:
phorbolin I
entrez id:
200315
ensembl gene id:
ENSG00000128383
ucsc gene id:
uc011aoc.3
refseq accession:
NM_145699
hgnc_id:
HGNC:17343
approved reserved:
2001-12-12
22q13.1
基因染色体位置图

APOBEC3A(载脂蛋白B mRNA编辑酶催化亚基3A)属于APOBEC3基因家族,该家族是一类具有胞苷脱氨酶活性的蛋白质,主要功能是通过将DNA或RNA中的胞嘧啶(C)转化为尿嘧啶(U)来编辑核酸序列,从而参与抗病毒防御(如抑制HIV、乙肝病毒等)和维持基因组稳定性。APOBEC3A的特异性在于其偏好单链DNA底物,可直接诱变病毒或宿主基因组。其表达产物是一种胞内蛋白,在免疫细胞(如巨噬细胞、树突状细胞)中活跃,通过脱氨作用破坏病原体遗传物质。该基因的主要作用位点为病毒复制中间体或宿主基因组中单链DNA暴露区域。突变可能导致酶活丧失(如催化结构域突变)或功能增强(如调控区突变),前者会削弱抗病毒能力,后者可能增加宿主基因组突变风险,与癌症(如乳腺癌、膀胱癌)中发现的APOBEC特征性突变谱相关。APOBEC3A过表达会引发基因组不稳定性,导致大量C-to-T或C-to-G突变(即"APOBEC突变标签"),促进肿瘤发生;同时可能过度抑制病毒复制。表达降低则可能增加病毒感染易感性,但减少自身DNA损伤风险。该基因家族(APOBEC3)的共性包括:1)均含锌依赖的脱氨酶结构域;2)通过编辑核酸发挥免疫作用;3)受干扰素刺激上调表达;4)部分成员具有RNA编辑能力(如APOBEC1)。需注意APOBEC3A与家族其他成员(如APOBEC3B)功能重叠但底物偏好不同,其过度活化可能与化疗耐药性及癌症转移相关。

This gene is a member of the cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and functionally related to the C to U RNA-editing cytidine deaminase APOBEC1. The protein encoded by this gene lacks the zinc binding activity of other family members. The protein plays a role in immunity, by restricting transmission of foreign DNA such as viruses. One mechanism of foreign DNA restriction is deamination of foreign double-stranded DNA cytidines to uridines, which leads to DNA degradation. However, other mechanisms are also thought to be involved, as anti-viral effect is not dependent on deaminase activity. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2012]

此基因是胞苷脱氨酶的基因家族的一个成员。它是七相关基因或假基因的簇中发现,认为是由基因复制导致之一,对染色体22被结构和功能上相关的C向U的RNA编辑胞苷脱氨酶APOBEC1簇编码的蛋白质的成员。由该基因编码的蛋白质缺少其他家庭成员的锌结合活性。该蛋白在免疫中的作用,通过限制外源DNA的传输(如病毒)。外源DNA的限制性的一种机制是外国双链DNA胞苷到尿苷,从而导致DNA降解的脱氨。然而,其它机制也被认为参与,如抗病毒效果不依赖于脱氨酶的活性。已发现该基因编码不同亚型的两个转录变异体。 [由RefSeq的,2012年7月提供]

APOBEC3A基因的碱基序列:[NCBI]
Loading Gene Browser...
APOBEC3A基因的碱基突变:           仅显示部分snp
rs1065183       rs1977066       rs1977067       rs1977068       rs1977069       rs2019896       rs2020232       rs2294363       rs3985950       rs4365560       rs4821845       rs5750717       rs6001341       rs6001342       rs7286317       rs7290153       rs7292690      

APOBEC3A基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
AATTTAAGCACTGCTGGGAC
59
TTCCCTGATTCTGGAGAATGG
60
CTTGAGCAAGTCGCAAGAG
59
GTGGATCCATCAAGTGTCTG
58
AATTTAAGCACTGCTGGGAC
59
TTCCCTGATTCTGGAGAATGG
60
CAGGCATGGAATCTTCCCT
60
TGTATGGTGTCTTCCGCTG
60
GACACTTGATGGATCCACAC
59
GAAGATTCTTAGCCTGGTTGTG
59
AATTTAAGCACTGCTGGGAC
59
TTCCCTGATTCTGGAGAATGG
60
AGGCATGGAATCTTCCCTG
60
TGTATGGTGTCTTCCGCTG
60
AATTTAAGCACTGCTGGGAC
59
TCCCTGATTCTGGAGAATGG
59
AATTTAAGCACTGCTGGGAC
59
TCCCTGATTCTGGAGAATGG
59
CTTGAGCAAGTCGCAAGAG
59
TGGATCCATCAAGTGTCTGG
60
      尚未收录相关数据

APOBEC3A基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

APOBEC3A基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0004126
P31941 (UniProtKB)
IDA
GO:0004126
P31941 (UniProtKB)
IMP
GO:0004126
P31941 (UniProtKB)
IDA
GO:0005515
P31941 (UniProtKB)
IPI
GO:0005634
P31941 (UniProtKB)
IDA
GO:0005634
P31941 (UniProtKB)
IDA
GO:0005634
P31941 (UniProtKB)
IDA
GO:0005654
P31941 (UniProtKB)
IDA
GO:0005737
P31941 (UniProtKB)
IDA
GO:0005737
P31941 (UniProtKB)
IDA
GO:0005737
P31941 (UniProtKB)
IDA
GO:0005737
P31941 (UniProtKB)
IDA
GO:0008270
P31941 (UniProtKB)
IEA
GO:0009972
P31941 (UniProtKB)
IEA
GO:0010529
P31941 (UniProtKB)
IDA
GO:0010529
P31941 (UniProtKB)
IDA
GO:0010529
P31941 (UniProtKB)
IDA
GO:0044356
P31941 (UniProtKB)
IDA
GO:0045071
P31941 (UniProtKB)
IDA
GO:0045087
P31941 (UniProtKB)
IDA
GO:0047844
P31941 (UniProtKB)
IMP
GO:0051607
P31941 (UniProtKB)
IDA
GO:0051607
P31941 (UniProtKB)
IDA
GO:0070383
P31941 (UniProtKB)
IDA
GO:0070383
P31941 (UniProtKB)
IMP
GO:0070383
P31941 (UniProtKB)
IDA
GO:0071466
P31941 (UniProtKB)
IDA
GO:0080111
P31941 (UniProtKB)
IDA

可能调控 APOBEC3A基因的相关microRNA:     

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Juvenile arthritis 0.12 1 0 CTD_human
Mammary Neoplasms 0.12 1 0 CTD_human
HIV Infections 0.001085767 4 0 BeFree
Malignant neoplasm of breast 0.000542884 2 0 BeFree
Breast Carcinoma 0.000542884 2 0 BeFree
Lentivirus Infections 0.000271442 1 0 BeFree
Malignant neoplasm of liver 0.000271442 1 0 BeFree
Nonorganic psychosis 0.000271442 1 0 BeFree
Psychotic Disorders 0.000271442 1 0 BeFree
Glioma 0.000271442 1 0 BeFree

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