APOB (apolipoprotein B)

symbol:
APOB
locus group:
protein-coding gene
location:
2p24.1
gene_family:
Apolipoproteins
alias symbol:
None
alias name:
None
entrez id:
338
ensembl gene id:
ENSG00000084674
ucsc gene id:
uc002red.3
refseq accession:
NM_000384
hgnc_id:
HGNC:603
approved reserved:
2001-06-22
2p24.1
基因染色体位置图

APOB(载脂蛋白B)基因编码两种主要蛋白亚型:APOB-100和APOB-48,它们通过RNA编辑产生。APOB-100主要在肝脏合成,是低密度脂蛋白(LDL)的核心成分,负责运输胆固醇至外周组织;APOB-48由小肠产生,参与乳糜微粒的形成以运输膳食脂质。APOB基因突变可导致家族性低β脂蛋白血症(表现为低胆固醇)或家族性高胆固醇血症(增加心血管疾病风险)。APOB属于载脂蛋白基因家族,该家族成员均参与脂质运输与代谢调控。APOB过表达会升高LDL水平,促进动脉粥样硬化;表达不足则导致脂质吸收障碍和脂肪溶性维生素缺乏。该基因的某些突变(如R3500Q)会降低LDL受体结合能力,显著增加冠心病风险。APOB-100的受体结合区域突变直接影响LDL清除效率,而APOB-48的编辑异常则影响肠道脂质吸收。此外,APOB表达水平还受PPARγ等核受体调控,与代谢综合征密切相关。

This gene product is the main apolipoprotein of chylomicrons and low density lipoproteins. It occurs in plasma as two main isoforms, apoB-48 and apoB-100: the former is synthesized exclusively in the gut and the latter in the liver. The intestinal and the hepatic forms of apoB are encoded by a single gene from a single, very long mRNA. The two isoforms share a common N-terminal sequence. The shorter apoB-48 protein is produced after RNA editing of the apoB-100 transcript at residue 2180 (CAA->UAA), resulting in the creation of a stop codon, and early translation termination. Mutations in this gene or its regulatory region cause hypobetalipoproteinemia, normotriglyceridemic hypobetalipoproteinemia, and hypercholesterolemia due to ligand-defective apoB, diseases affecting plasma cholesterol and apoB levels. [provided by RefSeq, Jul 2008]

此基因产物是乳糜微粒和低密度脂蛋白的主要载脂蛋白。它发生在血浆作为两种主要同种型,载脂蛋白B-48和载脂蛋白B-100:前者在肠和肝脏中后者只合成。肠道和载脂蛋白B肝形式由单个基因从一个单一的,非常长的mRNA编码。两个同种型共享共同的N-末端序列。较短载脂蛋白B-48蛋白在残基2180(CAA-> UAA)的载脂蛋白B-100转录物的RNA编辑之后产生的,导致产生终止密码子,和早期翻译终止。突变此基因或其调节区原因hypobetalipoproteine??mia,normotriglyceridemic hypobetalipoproteine??mia,和高胆固醇血症由于配体缺陷型载脂蛋白B,影响血浆胆固醇和载脂蛋白B水平的疾病。 [由RefSeq的,2008年7月提供]

APOB基因的碱基序列:[NCBI]
Loading Gene Browser...
APOB基因的碱基突变:           仅显示部分snp
rs693       rs488329       rs497166       rs512535       rs520354       rs531819       rs533617       rs535237       rs550619       rs562956       rs568413       rs570877       rs579826       rs584542       rs597331       rs617314       rs661665      

APOB基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
CAACTGCAAGGTTGAGCTG
60
TACACCTCTTTCAGGGTGC
59
CAAAGCCATCACTGATGATCC
60
GAACCTCCTGGTCCTTGTC
60
CTGATGGTGTCTCTAAGGTC
57
TTCCATTTACCATATCCTGCTC
58
转录因子
影响基因
影响类型
参考文献链接(PubMed)
FOXA1
APOB
Activation
HNF4A
APOB
Unknown
NR2F1
APOB
Unknown
NR2F6
APOB
Unknown
PPARA
APOB
Activation
PPARA
APOB
Repression
PPARG
APOB
Repression

APOB基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

APOB基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0005319
A0A087WTM7 (UniProtKB)
IEA
GO:0006869
A0A087WTM7 (UniProtKB)
IEA
GO:0005319
A8MUN2 (UniProtKB)
IEA
GO:0005737
A8MUN2 (UniProtKB)
IDA
GO:0005794
A8MUN2 (UniProtKB)
IDA
GO:0005886
A8MUN2 (UniProtKB)
IDA
GO:0006869
A8MUN2 (UniProtKB)
IEA
GO:0015629
A8MUN2 (UniProtKB)
IDA
GO:0001523
P04114 (UniProtKB)
TAS
GO:0001701
P04114 (UniProtKB)
IEA
GO:0005515
P04114 (UniProtKB)
IPI
GO:0005515
P04114 (UniProtKB)
IPI
GO:0005515
P04114 (UniProtKB)
IPI
GO:0005515
P04114 (UniProtKB)
IPI
GO:0005515
P04114 (UniProtKB)
IPI
GO:0005515
P04114 (UniProtKB)
IPI
GO:0005515
P04114 (UniProtKB)
IPI
GO:0005543
P04114 (UniProtKB)
IDA
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005576
P04114 (UniProtKB)
TAS
GO:0005615
P04114 (UniProtKB)
ISS
GO:0005737
P04114 (UniProtKB)
IDA
GO:0005737
P04114 (UniProtKB)
IDA
GO:0005769
P04114 (UniProtKB)
TAS
GO:0005769
P04114 (UniProtKB)
TAS
GO:0005769
P04114 (UniProtKB)
TAS
GO:0005788
P04114 (UniProtKB)
TAS
GO:0005788
P04114 (UniProtKB)
TAS
GO:0005788
P04114 (UniProtKB)
TAS
GO:0005789
P04114 (UniProtKB)
TAS
GO:0005794
P04114 (UniProtKB)
IDA
GO:0005829
P04114 (UniProtKB)
TAS
GO:0005829
P04114 (UniProtKB)
TAS
GO:0005886
P04114 (UniProtKB)
IDA
GO:0005886
P04114 (UniProtKB)
TAS
GO:0005886
P04114 (UniProtKB)
TAS
GO:0005886
P04114 (UniProtKB)
TAS
GO:0005886
P04114 (UniProtKB)
TAS
GO:0006642
P04114 (UniProtKB)
IEA
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0006898
P04114 (UniProtKB)
TAS
GO:0007283
P04114 (UniProtKB)
IEA
GO:0007399
P04114 (UniProtKB)
IEA
GO:0008201
P04114 (UniProtKB)
IDA
GO:0008203
P04114 (UniProtKB)
IMP
GO:0009566
P04114 (UniProtKB)
IEA
GO:0009615
P04114 (UniProtKB)
IEP
GO:0009743
P04114 (UniProtKB)
IEA
GO:0009791
P04114 (UniProtKB)
IEA
GO:0010008
P04114 (UniProtKB)
TAS
GO:0010008
P04114 (UniProtKB)
TAS
GO:0010269
P04114 (UniProtKB)
IEA
GO:0010628
P04114 (UniProtKB)
IEA
GO:0010744
P04114 (UniProtKB)
IDA
GO:0010744
P04114 (UniProtKB)
IDA
GO:0010744
P04114 (UniProtKB)
IDA
GO:0010884
P04114 (UniProtKB)
IDA
GO:0010886
P04114 (UniProtKB)
IDA
GO:0015629
P04114 (UniProtKB)
IDA
GO:0017127
P04114 (UniProtKB)
IMP
GO:0019433
P04114 (UniProtKB)
IEA
GO:0019433
P04114 (UniProtKB)
IEA
GO:0030301
P04114 (UniProtKB)
IMP
GO:0030317
P04114 (UniProtKB)
IEA
GO:0030669
P04114 (UniProtKB)
TAS
GO:0030669
P04114 (UniProtKB)
TAS
GO:0030669
P04114 (UniProtKB)
TAS
GO:0031904
P04114 (UniProtKB)
TAS
GO:0032496
P04114 (UniProtKB)
IEA
GO:0033344
P04114 (UniProtKB)
IEA
GO:0034359
P04114 (UniProtKB)
IDA
GO:0034360
P04114 (UniProtKB)
TAS
GO:0034361
P04114 (UniProtKB)
IDA
GO:0034361
P04114 (UniProtKB)
IDA
GO:0034362
P04114 (UniProtKB)
IDA
GO:0034363
P04114 (UniProtKB)
IDA
GO:0034374
P04114 (UniProtKB)
IMP
GO:0034379
P04114 (UniProtKB)
IC
GO:0034383
P04114 (UniProtKB)
IMP
GO:0034383
P04114 (UniProtKB)
IMP
GO:0035473
P04114 (UniProtKB)
IPI
GO:0042157
P04114 (UniProtKB)
TAS
GO:0042157
P04114 (UniProtKB)
TAS
GO:0042158
P04114 (UniProtKB)
TAS
GO:0042158
P04114 (UniProtKB)
TAS
GO:0042158
P04114 (UniProtKB)
TAS
GO:0042159
P04114 (UniProtKB)
TAS
GO:0042627
P04114 (UniProtKB)
IDA
GO:0042627
P04114 (UniProtKB)
IDA
GO:0042632
P04114 (UniProtKB)
IMP
GO:0042953
P04114 (UniProtKB)
IEA
GO:0043025
P04114 (UniProtKB)
IDA
GO:0043231
P04114 (UniProtKB)
TAS
GO:0044257
P04114 (UniProtKB)
TAS
GO:0045540
P04114 (UniProtKB)
IEA
GO:0048844
P04114 (UniProtKB)
IEA
GO:0050750
P04114 (UniProtKB)
IMP
GO:0050750
P04114 (UniProtKB)
IMP
GO:0050900
P04114 (UniProtKB)
TAS
GO:0070062
P04114 (UniProtKB)
IDA
GO:0071356
P04114 (UniProtKB)
IEA
GO:0071379
P04114 (UniProtKB)
IEA
GO:0071682
P04114 (UniProtKB)
TAS
GO:0071682
P04114 (UniProtKB)
TAS
GO:0071682
P04114 (UniProtKB)
TAS
GO:0071682
P04114 (UniProtKB)
TAS
GO:0071682
P04114 (UniProtKB)
TAS
GO:0071682
P04114 (UniProtKB)
TAS
GO:0071682
P04114 (UniProtKB)
TAS

可能调控 APOB基因的相关microRNA:     

Reactome

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Hypercholesterolemia, Familial 0.325067179 139 2 BeFree_CLINVAR_CTD_human_GAD_LHGDN
Cardiovascular Diseases 0.271466189 31 1 BeFree_CTD_human_GAD_GWASCAT
Hypercholesterolemia 0.257793508 67 3 BeFree_CTD_human_GAD_LHGDN_RGD
Familial hypobetalipoproteinemia 0.256286512 60 13 BeFree_CLINVAR_UNIPROT
Hyperlipoproteinemia Type IIb 0.249771907 38 3 BeFree_CLINVAR_UNIPROT
Fatty Liver 0.20434307 19 0 BeFree_CTD_human_RGD
Coronary heart disease 0.182126646 90 8 BeFree_CTD_human_GAD_LHGDN
Hypobetalipoproteinemias 0.170611248 82 1 BeFree_CLINVAR_GAD_LHGDN
Hyperlipidemia 0.143636644 21 0 BeFree_CTD_human_GAD_LHGDN
Dyslipidemias 0.135068718 22 1 BeFree_CTD_human_GAD_LHGDN

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