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Evaluation of hierarchical models for integrative genomic analyses.

Denis(Marie),Tadesse(Mahlet G) Bioinformatics 0000-00-00

...TCGA datasets used for analysis are publicly available at https://tcga-data.nci.nih.gov/tcga/tcgaDownload.jsp,marie.deni...

Bioinformatics Analysis to Determine Prognostic Mutations of 72 de novo Acute...

Welsh(Kerry J),Nedelcu(Elena),Wahed(Amer),... Ann Clin Lab Sci 2016-10-05

...TCGA) database has data from 200 cases of de novo AML including cytogenetics, gene mutations, and survival duration (pro...

Detection of Productively Rearranged TcR-α V-J Sequences in TCGA Exome Files:...

Gill(Thomas R),Samy(Mohammad D),Butler(Sha... Cancer Inform 2016-03-11

...TCGA) RNASeq data to assess T-cell receptor (TcR) expression and, in particular, discovered strong correlations between ...

Proteogenomic characterization of human colon and rectal cancer.

Zhang(Bing),Wang(Jing),Wang(Xiaojing),Zhu(... Nature 2014-10-14

...TCGA cohort, two of which overlapped with the TCGA 'microsatellite instability/CpG island methylation phenotype' transcr...

Expression of the embryonic morphogen Nodal in differentiated thyroid carcino...

Chai(Young Jun),Kim(Young A),Jee(Hyeon-Gun... Surgery 2015-02-18

...TCGA) analysis.,An immunohistochemistry assay was performed in a tissue microarray comprising 128 classic papillary thyr...

Inferring Aberrant Signal Transduction Pathways in Ovarian Cancer from TCGA D...

Neapolitan(Richard),Jiang(Xia) Cancer Inform 2014-11-13

...TCGA ovarian carcinoma dataset, and the 102 controls in all 5 TCGA cancer datasets. We identified all the genes related ...

Optimized Prediction of Extreme Treatment Outcomes in Ovarian Cancer.

Misganaw(Burook),Ahsen(Eren),Singh(Nitin),... Cancer Inform 2016-04-01

...TCGA Agilent platform data and cross-validated on the TCGA Affymetrix platform data, as well as entirely independent dat...

The Role of Cholesterol in Cancer.

Kuzu(Omer F),Noory(Mohammad A),Robertson(G... Cancer Res 0000-00-00

...TCGA) project using next-generation sequencing has profiled the mutational status and expression levels of all the genes...

Promoter methylation of the immune checkpoint receptor () is an independent ...

Goltz(Diane),Gevensleben(Heidrun),Dietrich... Oncoimmunology 0000-00-00

...TCGA) and a second cohort of 300 PCa cases treated at the University Hospital of Bonn. In the TCGA cohort, the promoter...

Combined image and genomic analysis of high-grade serous ovarian cancer revea...

Martins(Filipe C),Santiago(Ines de),Trinh(... Genome Biol 2015-08-18

...TCGA HGSOC tumours show that stroma strongly biases estimates of PTEN expression. Tumour-specific PTEN expression was te...

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