Home LiteratureArticle Details
PMID: 9889204 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Involvement of Arabidopsis thaliana ribosomal protein S27 in mRNA degradation triggered by genotoxic stress.

The EMBO journal ·Vol. 18 ·No. 2 ·1999-01-15 ·Pages 490-9

Revenkova E, Masson J, Koncz C, Afsar K, Jakovleva L, Paszkowski J

Abstract

A recessive Arabidopsis mutant with elevated sensitivity to DNA damaging treatments was identified in one out of 800 families generated by T-DNA insertion mutagenesis. The T-DNA generated a chromosomal deletion of 1287 bp in the promoter of one of three S27 ribosomal protein genes (ARS27A) preventing its expression. Seedlings of ars27A developed normally under standard growth conditions, suggesting wild-type proficiency of translation. However, growth was strongly inhibited in media supplemented with methyl methane sulfate (MMS) at a concentration not affecting the wild type. This inhibition was accompanied by the formation of tumor-like structures instead of auxiliary roots. Wild-type seedlings treated with increasing concentrations of MMS up to a lethal dose never displayed such a trait, neither was this phenotype observed in ars27A plants in the absence of MMS or under other stress conditions. Thus, the hypersensitivity and tumorous growth are mutant-specific responses to the genotoxic MMS treatment. Another important feature of the mutant is its inability to perform rapid degradation of transcripts after UV treatment, as seen in wild-type plants. Therefore, we propose that the ARS27A protein is dispensable for protein synthesis under standard conditions but is required for the elimination of possibly damaged mRNA after UV irradiation.

MeSH Terms
Amino Acid Sequence Arabidopsis/genetics,metabolism Arabidopsis Proteins DNA Damage Genes, Plant/drug effects Humans Metalloproteins Methyl Methanesulfonate/toxicity Molecular Sequence Data Mutagenesis, Insertional Mutagens/toxicity Mutation Nuclear Proteins Phenotype Plant Proteins/metabolism RNA, Messenger/metabolism RNA, Plant/metabolism RNA-Binding Proteins Ribosomal Proteins/metabolism Sequence Homology, Amino Acid
Chemicals
ARS27A protein, Arabidopsis Arabidopsis Proteins Metalloproteins Mutagens Nuclear Proteins Plant Proteins RNA, Messenger RNA, Plant RNA-Binding Proteins RPS27 protein, human Ribosomal Proteins Methyl Methanesulfonate
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Revenkova E
Friedrich Miescher Institute, PO Box 2543, CH-4002 Basel, Switzerland. revenek@fmi.ch
Masson J
Koncz C
Afsar K
Jakovleva L
Paszkowski J
References (48)
48 references, click to expand
  1. Organ-Specific Stability of Two Lemna rbcS mRNAs Is Determined Primarily in the Nuclear Compartment.
    Plant Cell. 1995 Jan;7(1):131-140 PMID: 12242353
  2. Red Light-Independent Instability of Oat Phytochrome mRNA in Vivo.
    Plant Cell. 1992 Jan;4(1):29-38 PMID: 12297628
  3. Complementation of Saccharomyces cerevisiae auxotrophic mutants by Arabidopsis thaliana cDNAs.
    Plant J. 1992 May;2(3):417-22 PMID: 1303803
  4. SSL2, a suppressor of a stem-loop mutation in the HIS4 leader encodes the yeast homolog of human ERCC-3.
    Cell. 1992 Jun 12;69(6):1031-42 PMID: 1318786
  5. SSL1, a suppressor of a HIS4 5'-UTR stem-loop mutation, is essential for translation initiation and affects UV resistance in yeast.
    Genes Dev. 1992 Dec;6(12B):2463-77 PMID: 1340463
  6. 7-2/MRP RNAs in plant and mammalian cells: association with higher order structures in the nucleolus.
    EMBO J. 1992 Oct;11(10):3737-46 PMID: 1382978
  7. Recombination and RNA processing: a common strand?
    Trends Cell Biol. 1991 Nov;1(5):110-2 PMID: 14731541
  8. Molecular and genetic analysis of the gene encoding the Saccharomyces cerevisiae strand exchange protein Sep1.
    Mol Cell Biol. 1991 May;11(5):2593-608 PMID: 1840632
  9. Drosophila AP3, a presumptive DNA repair protein, is homologous to human ribosomal associated protein P0.
    Nucleic Acids Res. 1991 Aug 11;19(15):4297 PMID: 1870984
  10. Purification and characterization of yeast RNA polymerase II transcription factor b.
    J Biol Chem. 1991 Oct 5;266(28):19000-5 PMID: 1918015
  11. UmuC mutagenesis protein of Escherichia coli: purification and interaction with UmuD and UmuD'.
    Proc Natl Acad Sci U S A. 1989 Oct;86(19):7301-5 PMID: 2552436
  12. High-frequency T-DNA-mediated gene tagging in plants.
    Proc Natl Acad Sci U S A. 1989 Nov;86(21):8467-71 PMID: 2554318
  13. Nucleotide sequence of a 25S rRNA gene from tomato.
    Nucleic Acids Res. 1989 Jan 25;17(2):796 PMID: 2915931
  14. Nucleotide sequence of an actin gene from Arabidopsis thaliana.
    Gene. 1988 May 30;65(2):247-57 PMID: 3410320
  15. Large plasmid in Agrobacterium tumefaciens essential for crown gall-inducing ability.
    Nature. 1974 Nov 8;252(5479):169-70 PMID: 4419109
  16. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  17. Genomic sequencing.
    Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991-5 PMID: 6326095
  18. When cells stop making sense: effects of nonsense codons on RNA metabolism in vertebrate cells.
    RNA. 1995 Jul;1(5):453-65 PMID: 7489507
  19. Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
    Proc Int Conf Intell Syst Mol Biol. 1994;2:28-36 PMID: 7584402
  20. Implication of mammalian ribosomal protein S3 in the processing of DNA damage.
    J Biol Chem. 1995 Jun 9;270(23):13620-9 PMID: 7775413
  21. The yeast TFB1 and SSL1 genes, which encode subunits of transcription factor IIH, are required for nucleotide excision repair and RNA polymerase II transcription.
    Mol Cell Biol. 1995 Apr;15(4):2288-93 PMID: 7891722
  22. An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems.
    EMBO J. 1994 Jul 15;13(14):3378-88 PMID: 7913892
  23. mRNA surveillance by the Caenorhabditis elegans smg genes.
    Genes Dev. 1993 Oct;7(10):1885-97 PMID: 8104846
  24. Transcription factor b (TFIIH) is required during nucleotide-excision repair in yeast.
    Nature. 1994 Mar 3;368(6466):74-6 PMID: 8107888
  25. The search for the right partner: homologous pairing and DNA strand exchange proteins in eukaryotes.
    Experientia. 1994 Mar 15;50(3):223-33 PMID: 8143796
  26. p44 and p34 subunits of the BTF2/TFIIH transcription factor have homologies with SSL1, a yeast protein involved in DNA repair.
    EMBO J. 1994 May 15;13(10):2393-8 PMID: 8194529
  27. Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair.
    Cell. 1993 Dec 31;75(7):1379-87 PMID: 8269516
  28. A growth factor-inducible gene encodes a novel nuclear protein with zinc finger structure.
    J Biol Chem. 1993 Oct 5;268(28):21198-204 PMID: 8407955
  29. Activity of chimeric U small nuclear RNA (snRNA)/mRNA genes in transfected protoplasts of Nicotiana plumbaginifolia: U snRNA 3'-end formation and transcription initiation can occur independently in plants.
    Mol Cell Biol. 1993 Oct;13(10):6403-15 PMID: 8413239
  30. Zinc finger-like motifs in rat ribosomal proteins S27 and S29.
    Nucleic Acids Res. 1993 Feb 11;21(3):649-55 PMID: 8441676
  31. Metallopanstimulin as a novel tumor marker in sera of patients with various types of common cancers: implications for prevention and therapy.
    Anticancer Res. 1996 Jul-Aug;16(4B):2177-85 PMID: 8694540
  32. The Escherichia coli ribosomal protein S16 is an endonuclease.
    Mol Microbiol. 1996 Mar;19(6):1319-30 PMID: 8730873
  33. Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells.
    Annu Rev Biochem. 1996;65:693-739 PMID: 8811193
  34. A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation.
    Plant J. 1996 Sep;10(3):479-89 PMID: 8811862
  35. Extraribosomal functions of ribosomal proteins.
    Trends Biochem Sci. 1996 May;21(5):164-5 PMID: 8871397
  36. Mass spectrometric analysis of 40 S ribosomal proteins from Rat-1 fibroblasts.
    J Biol Chem. 1996 Nov 8;271(45):28189-98 PMID: 8910435
  37. Making sense of nonsense in yeast.
    Trends Biochem Sci. 1996 Nov;21(11):433-8 PMID: 8987399
  38. A novel zinc finger protein is encoded by the Arabidopsis LSD1 gene and functions as a negative regulator of plant cell death.
    Cell. 1997 Mar 7;88(5):685-94 PMID: 9054508
  39. Mutants of Arabidopsis thaliana hypersensitive to DNA-damaging treatments.
    Genetics. 1997 May;146(1):401-7 PMID: 9136028
  40. mRNA stability and localisation of the low-temperature-responsive barley gene family blt14.
    Plant Mol Biol. 1997 Apr;33(6):1013-23 PMID: 9154983
  41. Genes for Tfb2, Tfb3, and Tfb4 subunits of yeast transcription/repair factor IIH. Homology to human cyclin-dependent kinase activating kinase and IIH subunits.
    J Biol Chem. 1997 Aug 1;272(31):19319-27 PMID: 9235928
  42. The Drosophila ribosomal protein L14-encoding gene, identified by a novel Minute mutation in a dense cluster of previously undescribed genes in cytogenetic region 66D.
    Mol Gen Genet. 1997 Jun;255(2):141-51 PMID: 9236770
  43. Functional analysis of Rrp7p, an essential yeast protein involved in pre-rRNA processing and ribosome assembly.
    Mol Cell Biol. 1997 Sep;17(9):5023-32 PMID: 9271380
  44. High-efficiency transformation of Arabidopsis thaliana with a selectable marker gene regulated by the T-DNA 1' promoter.
    Plant J. 1997 Oct;12(4):945-8 PMID: 9375405
  45. The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases.
    Cell. 1997 Nov 14;91(4):457-66 PMID: 9390555
  46. Combining evidence using p-values: application to sequence homology searches.
    Bioinformatics. 1998;14(1):48-54 PMID: 9520501
  47. A heat-sensitive Arabidopsis thaliana kinase substitutes for human p70s6k function in vivo.
    Mol Cell Biol. 1998 Apr;18(4):2038-44 PMID: 9528776
  48. Ultraviolet radiation triggers the ribotoxic stress response in mammalian cells.
    J Biol Chem. 1998 Jun 19;273(25):15794-803 PMID: 9624179
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1999-01-15
Pages
490-9
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1171142
Subset
IM
Databases
GENBANK
AF083336, AF083337
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com