Home LiteratureArticle Details
PMID: 9799248 Published · ppublish English Journal Article

Structure of an XRCC1 BRCT domain: a new protein-protein interaction module.

The EMBO journal ·Vol. 17 ·No. 21 ·1998-11-02 ·Pages 6404-11

Zhang X, Moréra S, Bates PA, Whitehead PC, Coffer AI, Hainbucher K, Nash RA, Sternberg MJ, Lindahl T, Freemont PS

Abstract

The BRCT domain (BRCA1 C-terminus), first identified in the breast cancer suppressor protein BRCA1, is an evolutionarily conserved protein-protein interaction region of approximately 95 amino acids found in a large number of proteins involved in DNA repair, recombination and cell cycle control. Here we describe the first three-dimensional structure and fold of a BRCT domain determined by X-ray crystallography at 3.2 A resolution. The structure has been obtained from the C-terminal region of the human DNA repair protein XRCC1, and comprises a four-stranded parallel beta-sheet surrounded by three alpha-helices, which form an autonomously folded domain. The compact XRCC1 structure explains the observed sequence homology between different BRCT motifs and provides a framework for modelling other BRCT domains. Furthermore, the established structure of an XRCC1 BRCT homodimer suggests potential protein-protein interaction sites for the complementary BRCT domain in DNA ligase III, since these two domains form a stable heterodimeric complex. Based on the XRCC1 BRCT structure, we have constructed a model for the C-terminal BRCT domain of BRCA1, which frequently is mutated in familial breast and ovarian cancer. The model allows insights into the effects of such mutations on the fold of the BRCT domain.

MeSH Terms
Amino Acid Sequence BRCA1 Protein/genetics Conserved Sequence/genetics Crystallography, X-Ray DNA-Binding Proteins/chemistry Dimerization Models, Molecular Molecular Sequence Data Mutation/genetics Protein Binding/genetics Protein Structure, Secondary Protein Structure, Tertiary Sequence Alignment X-ray Repair Cross Complementing Protein 1
Chemicals
BRCA1 Protein DNA-Binding Proteins X-ray Repair Cross Complementing Protein 1 XRCC1 protein, human
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Zhang X
Molecular Structure and Function, Imperial Cancer Research Fund, 44 Lincoln's Inn Fields, London WC2A 3PX, UK.
Moréra S
Bates P A
Whitehead P C
Coffer A I
Hainbucher K
Nash R A
Sternberg M J
Lindahl T
Freemont P S
References (33)
33 references, click to expand
  1. Transcriptional activation by BRCA1.
    Nature. 1996 Aug 22;382(6593):678-9 PMID: 8751436
  2. BRCA1 protein products ... Functional motifs...
    Nat Genet. 1996 Jul;13(3):266-8 PMID: 8673121
  3. From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair.
    FEBS Lett. 1997 Jan 2;400(1):25-30 PMID: 9000507
  4. Association of BRCA1 with Rad51 in mitotic and meiotic cells.
    Cell. 1997 Jan 24;88(2):265-75 PMID: 9008167
  5. A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins.
    FASEB J. 1997 Jan;11(1):68-76 PMID: 9034168
  6. XRCC1 protein interacts with one of two distinct forms of DNA ligase III.
    Biochemistry. 1997 Apr 29;36(17):5207-11 PMID: 9136882
  7. BRCA1 is a component of the RNA polymerase II holoenzyme.
    Proc Natl Acad Sci U S A. 1997 May 27;94(11):5605-10 PMID: 9159119
  8. Breast cancer genes--what are the real risks?
    Nat Genet. 1997 Jul;16(3):210-1 PMID: 9207777
  9. Pfam: a comprehensive database of protein domain families based on seed alignments.
    Proteins. 1997 Jul;28(3):405-20 PMID: 9223186
  10. Mammalian DNA double-strand break repair protein XRCC4 interacts with DNA ligase IV.
    Curr Biol. 1997 Aug 1;7(8):588-98 PMID: 9259561
  11. Involvement of XRCC1 and DNA ligase III gene products in DNA base excision repair.
    J Biol Chem. 1997 Sep 19;272(38):23970-5 PMID: 9295348
  12. Specific versus non-specific contacts in protein crystals.
    Nat Struct Biol. 1997 Dec;4(12):973-4 PMID: 9406542
  13. Mutations in hamster single-strand break repair gene XRCC1 causing defective DNA repair.
    Nucleic Acids Res. 1998 Feb 15;26(4):1032-7 PMID: 9461464
  14. Assessment of comparative modeling in CASP2.
    Proteins. 1997;Suppl 1:14-28 PMID: 9485491
  15. Model building by comparison: a combination of expert knowledge and computer automation.
    Proteins. 1997;Suppl 1:59-67 PMID: 9485496
  16. BRCA1 regulates p53-dependent gene expression.
    Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2302-6 PMID: 9482880
  17. Functions of the BRCA1 and BRCA2 genes.
    Curr Opin Genet Dev. 1998 Feb;8(1):14-20 PMID: 9529600
  18. XRCC1 is specifically associated with poly(ADP-ribose) polymerase and negatively regulates its activity following DNA damage.
    Mol Cell Biol. 1998 Jun;18(6):3563-71 PMID: 9584196
  19. BRCA1 protein is linked to the RNA polymerase II holoenzyme complex via RNA helicase A.
    Nat Genet. 1998 Jul;19(3):254-6 PMID: 9662397
  20. Saccharomyces cerevisiae LIF1: a function involved in DNA double-strand break repair related to mammalian XRCC4.
    EMBO J. 1998 Jul 15;17(14):4188-98 PMID: 9670033
  21. Role of a BRCT domain in the interaction of DNA ligase III-alpha with the DNA repair protein XRCC1.
    Curr Biol. 1998 Jul 16;8(15):877-80 PMID: 9705932
  22. Molecular cloning of the human XRCC1 gene, which corrects defective DNA strand break repair and sister chromatid exchange.
    Mol Cell Biol. 1990 Dec;10(12):6160-71 PMID: 2247054
  23. Prediction of protein side-chain conformation by packing optimization.
    J Mol Biol. 1991 Jan 20;217(2):373-88 PMID: 1992168
  24. Improved methods for building protein models in electron density maps and the location of errors in these models.
    Acta Crystallogr A. 1991 Mar 1;47 ( Pt 2):110-9 PMID: 2025413
  25. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.
    Proteins. 1991;11(4):281-96 PMID: 1758883
  26. Protein structure comparison by alignment of distance matrices.
    J Mol Biol. 1993 Sep 5;233(1):123-38 PMID: 8377180
  27. Altered DNA ligase III activity in the CHO EM9 mutant.
    Mutat Res. 1994 Mar;314(2):177-86 PMID: 7510367
  28. Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy.
    J Mol Biol. 1994 Jun 3;239(2):249-75 PMID: 8196057
  29. A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1.
    Science. 1994 Oct 7;266(5182):66-71 PMID: 7545954
  30. A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling.
    Nat Struct Biol. 1995 Feb;2(2):163-70 PMID: 7538429
  31. Germline mutations of the BRCA1 gene in breast and ovarian cancer families provide evidence for a genotype-phenotype correlation.
    Nat Genet. 1995 Dec;11(4):428-33 PMID: 7493024
  32. Characterization of the XRCC1-DNA ligase III complex in vitro and its absence from mutant hamster cells.
    Nucleic Acids Res. 1995 Dec 11;23(23):4836-43 PMID: 8532526
  33. Reconstitution of DNA base excision-repair with purified human proteins: interaction between DNA polymerase beta and the XRCC1 protein.
    EMBO J. 1996 Dec 2;15(23):6662-70 PMID: 8978692
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1998-11-02
Pages
6404-11
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1170965
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com