Home LiteratureArticle Details
PMID: 9632792 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Role of the PAS domain in regulation of dimerization and DNA binding specificity of the dioxin receptor.

Molecular and cellular biology ·Vol. 18 ·No. 7 ·1998-07-00 ·Pages 4079-88

Pongratz I, Antonsson C, Whitelaw ML, Poellinger L

Abstract

The dioxin receptor is a ligand-regulated transcription factor that mediates signal transduction by dioxin and related environmental pollutants. The receptor belongs to the basic helix-loop-helix (bHLH)-Per-Arnt-Sim (PAS) family of factors, which, in addition to the bHLH motif, contain a PAS region of homology. Upon activation, the dioxin receptor dimerizes with the bHLH-PAS factor Arnt, enabling the receptor to recognize xenobiotic response elements in the vicinity of target genes. We have studied the role of the PAS domain in dimerization and DNA binding specificity of the dioxin receptor and Arnt by monitoring the abilities of the individual bHLH domains and different bHLH-PAS fragments to dimerize and bind DNA in vitro and recognize target genes in vivo. The minimal bHLH domain of the dioxin receptor formed homodimeric complexes, heterodimerized with full-length Arnt, and together with Arnt was sufficient for recognition of target DNA in vitro and in vivo. In a similar fashion, only the bHLH domain of Arnt was necessary for DNA binding specificity in the presence of the dioxin receptor bHLH domain. Moreover, the bHLH domain of the dioxin receptor displayed a broad dimerization potential, as manifested by complex formation with, e.g. , the unrelated bHLH-Zip transcription factor USF. In contrast, a construct spanning the dioxin receptor bHLH domain and an N-terminal portion of the PAS domain failed to form homodimers and was capable of dimerizing only with Arnt. Thus, the PAS domain is essential to confer dimerization specificity of the dioxin receptor.

MeSH Terms
Animals Aryl Hydrocarbon Receptor Nuclear Translocator Basic Helix-Loop-Helix Transcription Factors COS Cells DNA/metabolism DNA-Binding Proteins Dimerization Escherichia coli Helix-Loop-Helix Motifs/physiology Receptors, Aryl Hydrocarbon/genetics,metabolism,physiology Recombinant Fusion Proteins/genetics,metabolism,physiology Regulatory Sequences, Nucleic Acid Trans-Activators/physiology Transcription Factors/genetics,metabolism,physiology
Chemicals
Basic Helix-Loop-Helix Transcription Factors DNA-Binding Proteins Receptors, Aryl Hydrocarbon Recombinant Fusion Proteins Trans-Activators Transcription Factors Aryl Hydrocarbon Receptor Nuclear Translocator endothelial PAS domain-containing protein 1 DNA
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Pongratz I
Department of Cell and Molecular Biology, Karolinska Institutet, S-171-77 Stockholm, Sweden.
Antonsson C
Whitelaw M L
Poellinger L
References (57)
57 references, click to expand
  1. Transcription factor AP-4 contains multiple dimerization domains that regulate dimer specificity.
    Genes Dev. 1990 Oct;4(10):1741-52 PMID: 2123466
  2. The adenovirus major late transcription factor USF is a member of the helix-loop-helix group of regulatory proteins and binds to DNA as a dimer.
    Genes Dev. 1990 Oct;4(10):1730-40 PMID: 2249772
  3. Cloning of a factor required for activity of the Ah (dioxin) receptor.
    Science. 1991 May 17;252(5008):954-8 PMID: 1852076
  4. The leucine zipper of TFE3 dictates helix-loop-helix dimerization specificity.
    Genes Dev. 1991 Jun;5(6):1057-66 PMID: 2044953
  5. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.
    Science. 1991 Oct 25;254(5031):539-44 PMID: 1948029
  6. The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development.
    Cell. 1991 Dec 20;67(6):1157-67 PMID: 1760843
  7. mTFE3, an X-linked transcriptional activator containing basic helix-loop-helix and zipper domains, utilizes the zipper to stabilize both DNA binding and multimerization.
    Mol Cell Biol. 1992 Feb;12(2):817-27 PMID: 1732746
  8. cDNA cloning and structure of mouse putative Ah receptor.
    Biochem Biophys Res Commun. 1992 Apr 15;184(1):246-53 PMID: 1314586
  9. Dual roles of the 90-kDa heat shock protein hsp90 in modulating functional activities of the dioxin receptor. Evidence that the dioxin receptor functionally belongs to a subclass of nuclear receptors which require hsp90 both for ligand binding activity and repression of intrinsic DNA binding activity.
    J Biol Chem. 1992 Jul 5;267(19):13728-34 PMID: 1320028
  10. Cloning of the Ah-receptor cDNA reveals a distinctive ligand-activated transcription factor.
    Proc Natl Acad Sci U S A. 1992 Sep 1;89(17):8185-9 PMID: 1325649
  11. Transcriptional activation by the human c-Myc oncoprotein in yeast requires interaction with Max.
    Nature. 1992 Oct 1;359(6394):423-6 PMID: 1406955
  12. Mutational analysis of Max: role of basic, helix-loop-helix/leucine zipper domains in DNA binding, dimerization and regulation of Myc-mediated transcriptional activation.
    Oncogene. 1992 Oct;7(10):2085-92 PMID: 1408152
  13. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex.
    Cell. 1992 Dec 24;71(7):1223-37 PMID: 1473154
  14. Both the helix-loop-helix and the leucine zipper motifs of c-Myc contribute to its dimerization specificity with Max.
    Oncogene. 1993 Jan;8(1):125-32 PMID: 8423990
  15. Consequences of heteromeric interactions among helix-loop-helix proteins.
    Cell Growth Differ. 1993 Jan;4(1):49-55 PMID: 8424906
  16. Ligand-dependent recruitment of the Arnt coregulator determines DNA recognition by the dioxin receptor.
    Mol Cell Biol. 1993 Apr;13(4):2504-14 PMID: 8384309
  17. Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain.
    Nature. 1993 May 6;363(6424):38-45 PMID: 8479534
  18. PAS is a dimerization domain common to Drosophila period and several transcription factors.
    Nature. 1993 Jul 15;364(6434):259-62 PMID: 8391649
  19. The aryl hydrocarbon receptor complex.
    Annu Rev Pharmacol Toxicol. 1995;35:307-40 PMID: 7598497
  20. Protein-protein interaction via PAS domains: role of the PAS domain in positive and negative regulation of the bHLH/PAS dioxin receptor-Arnt transcription factor complex.
    EMBO J. 1995 Jul 17;14(14):3528-39 PMID: 7628454
  21. Down syndrome-critical region contains a gene homologous to Drosophila sim expressed during rat and human central nervous system development.
    Proc Natl Acad Sci U S A. 1995 Sep 26;92(20):9191-5 PMID: 7568099
  22. Definition of a minimal domain of the dioxin receptor that is associated with Hsp90 and maintains wild type ligand binding affinity and specificity.
    J Biol Chem. 1995 Oct 20;270(42):25291-300 PMID: 7559670
  23. Transcription factors 2: helix-loop-helix.
    Protein Profile. 1995;2(6):621-702 PMID: 7553065
  24. DNA binding specificities and pairing rules of the Ah receptor, ARNT, and SIM proteins.
    J Biol Chem. 1995 Nov 3;270(44):26292-302 PMID: 7592839
  25. Identification of functional domains of the aryl hydrocarbon receptor.
    J Biol Chem. 1995 Dec 8;270(49):29270-8 PMID: 7493958
  26. Functional interference between hypoxia and dioxin signal transduction pathways: competition for recruitment of the Arnt transcription factor.
    Mol Cell Biol. 1996 Oct;16(10):5221-31 PMID: 8816435
  27. Endothelial PAS domain protein 1 (EPAS1), a transcription factor selectively expressed in endothelial cells.
    Genes Dev. 1997 Jan 1;11(1):72-82 PMID: 9000051
  28. Molecular characterization of two mammalian bHLH-PAS domain proteins selectively expressed in the central nervous system.
    Proc Natl Acad Sci U S A. 1997 Jan 21;94(2):713-8 PMID: 9012850
  29. Abnormal angiogenesis and responses to glucose and oxygen deprivation in mice lacking the protein ARNT.
    Nature. 1997 Mar 27;386(6623):403-7 PMID: 9121557
  30. A novel bHLH-PAS factor with close sequence similarity to hypoxia-inducible factor 1alpha regulates the VEGF expression and is potentially involved in lung and vascular development.
    Proc Natl Acad Sci U S A. 1997 Apr 29;94(9):4273-8 PMID: 9113979
  31. Positional cloning of the mouse circadian clock gene.
    Cell. 1997 May 16;89(4):641-53 PMID: 9160755
  32. Functional identification of the mouse circadian Clock gene by transgenic BAC rescue.
    Cell. 1997 May 16;89(4):655-67 PMID: 9160756
  33. Mouse estrogen receptor beta forms estrogen response element-binding heterodimers with estrogen receptor alpha.
    Mol Endocrinol. 1997 Sep;11(10):1486-96 PMID: 9280064
  34. The PAS domain confers target gene specificity of Drosophila bHLH/PAS proteins.
    Genes Dev. 1997 Aug 15;11(16):2079-89 PMID: 9284047
  35. RIGUI, a putative mammalian ortholog of the Drosophila period gene.
    Cell. 1997 Sep 19;90(6):1003-11 PMID: 9323128
  36. Circadian oscillation of a mammalian homologue of the Drosophila period gene.
    Nature. 1997 Oct 2;389(6650):512-6 PMID: 9333243
  37. In vitro analysis of Ah receptor domains involved in ligand-activated DNA recognition.
    Proc Natl Acad Sci U S A. 1993 Sep 15;90(18):8566-70 PMID: 8397410
  38. Definition of a novel ligand binding domain of a nuclear bHLH receptor: co-localization of ligand and hsp90 binding activities within the regulable inactivation domain of the dioxin receptor.
    EMBO J. 1993 Nov;12(11):4169-79 PMID: 8223432
  39. HLH proteins, fly neurogenesis, and vertebrate myogenesis.
    Cell. 1993 Dec 3;75(5):827-30 PMID: 8252617
  40. The MyoD family and myogenesis: redundancy, networks, and thresholds.
    Cell. 1993 Dec 31;75(7):1241-4 PMID: 8269506
  41. Structure and function of the b/HLH/Z domain of USF.
    EMBO J. 1994 Jan 1;13(1):180-9 PMID: 8306960
  42. Purification of the DNA binding form of dioxin receptor. Role of the Arnt cofactor in regulation of dioxin receptor function.
    J Biol Chem. 1994 Feb 11;269(6):4438-49 PMID: 8308014
  43. Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation.
    Cell. 1994 May 6;77(3):451-9 PMID: 8181063
  44. Identification of functional domains of the aryl hydrocarbon receptor nuclear translocator protein (ARNT).
    Mol Cell Biol. 1994 Sep;14(9):6075-86 PMID: 8065341
  45. Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer.
    Genes Dev. 1994 Apr 15;8(8):970-80 PMID: 7926781
  46. Identification of transactivation and repression functions of the dioxin receptor and its basic helix-loop-helix/PAS partner factor Arnt: inducible versus constitutive modes of regulation.
    Mol Cell Biol. 1994 Dec;14(12):8343-55 PMID: 7969169
  47. The 90-kDa heat shock protein is essential for Ah receptor signaling in a yeast expression system.
    J Biol Chem. 1994 Dec 2;269(48):30109-12 PMID: 7982913
  48. Transcriptional control points during lymphopoiesis.
    Cell. 1994 Dec 2;79(5):751-3 PMID: 8001114
  49. Distinct roles of the molecular chaperone hsp90 in modulating dioxin receptor function via the basic helix-loop-helix and PAS domains.
    Mol Cell Biol. 1995 Feb;15(2):756-65 PMID: 7823943
  50. Possible function of Ah receptor nuclear translocator (Arnt) homodimer in transcriptional regulation.
    Proc Natl Acad Sci U S A. 1995 Mar 14;92(6):1936-40 PMID: 7892203
  51. Heat shock protein hsp90 regulates dioxin receptor function in vivo.
    Proc Natl Acad Sci U S A. 1995 May 9;92(10):4437-41 PMID: 7753824
  52. Constitutive function of the basic helix-loop-helix/PAS factor Arnt. Regulation of target promoters via the E box motif.
    J Biol Chem. 1995 Jun 9;270(23):13968-72 PMID: 7775458
  53. Hypoxia-inducible factor 1 is a basic-helix-loop-helix-PAS heterodimer regulated by cellular O2 tension.
    Proc Natl Acad Sci U S A. 1995 Jun 6;92(12):5510-4 PMID: 7539918
  54. Polyanionic-binding properties of the receptor for 2,3,7,8-tetrachlorodibenzo-p-dioxin. A comparison with the glucocorticoid receptor.
    J Biol Chem. 1986 Oct 15;261(29):13456-63 PMID: 3020033
  55. Specific protein-DNA interactions at a xenobiotic-responsive element: copurification of dioxin receptor and DNA-binding activity.
    Proc Natl Acad Sci U S A. 1989 Jan;86(1):60-4 PMID: 2536161
  56. The specific DNA binding activity of the dioxin receptor is modulated by the 90 kd heat shock protein.
    EMBO J. 1990 Jan;9(1):69-76 PMID: 2153080
  57. Role of the ligand in intracellular receptor function: receptor affinity determines activation in vitro of the latent dioxin receptor to a DNA-binding form.
    Mol Cell Biol. 1991 Jan;11(1):401-11 PMID: 1986235
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1998-07-00
Pages
4079-88
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC108992
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com