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PMID: 9615222 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

The human HNRPD locus maps to 4q21 and encodes a highly conserved protein.

Genomics ·Vol. 49 ·No. 3 ·1998-05-01 ·Pages 378-84

Dempsey LA, Li MJ, DePace A, Bray-Ward P, Maizels N

Abstract

The hnRNP D protein interacts with nucleic acids both in vivo and in vitro. Like many other proteins that interact with RNA, it contains RBD (or "RRM") domains and arg-gly-gly (RGG) motifs. We have examined the organization and localization of the human and murine genes that encode the hnRNP D protein. Comparison of the predicted sequences of the hnRNP D proteins in human and mouse shows that they are 96.9% identical (98.9% similar). This very high level of conservation suggests a critical function for hnRNP D. Sequence analysis of the human HNRPD gene shows that the protein is encoded by eight exons and that two additional exons specify sequences in the 3' UTR. Use of two of the coding exons is determined by alternative splicing of the HNRPD mRNA. The human HNRPD gene maps to 4q21. The mouse Hnrpd gene maps to the F region of chromosome 3, which is syntenic with the human 4q21 region.

MeSH Terms
Amino Acid Sequence Animals Base Sequence Chromosome Mapping Chromosomes, Human, Pair 4 Conserved Sequence Exons Heterogeneous-Nuclear Ribonucleoproteins Humans Introns Karyotyping Mice Molecular Sequence Data Polymerase Chain Reaction Ribonucleoproteins/biosynthesis,chemistry,genetics Sequence Alignment Sequence Homology, Amino Acid
Chemicals
Heterogeneous-Nuclear Ribonucleoproteins Ribonucleoproteins
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Dempsey L A
Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520-8114, USA.
Li M J
DePace A
Bray-Ward P
Maizels N
Article Info
Journal
Genomics
Abbr.
Genomics
ISSN
0888-7543
Published
1998-05-01
Pages
378-84
Language
English
Region
United States
NLM ID
8800135
Subset
IM
Grants
NCI NIH HHS · P01 CA16038 · United States
NIGMS NIH HHS · GM15948 · United States
NCI NIH HHS · P01 CA016038 · United States
NIGMS NIH HHS · R01 GM039799 · United States
NHGRI NIH HHS · R01 HG110272 · United States
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GENBANK
AF026126
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