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PMID: 9399880 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins.

Nucleic acids research ·Vol. 26 ·No. 1 ·1998-01-01 ·Pages 387-9

Hansen JE, Lund O, Nilsson J, Rapacki K, Brunak S

Abstract

O-GLYCBASE is a revised database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the sequence databases. Entries include information about species, sequence, glycosylation sites and glycan type and is fully cross-referenced. Compared to version 2.0 the number of entries has increased by 20%. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu. dk/databases/OGLYCBASE/

MeSH Terms
Amino Acid Sequence Animals Binding Sites Computer Communication Networks Databases, Factual Glycoproteins/chemistry,metabolism Glycosylation Information Storage and Retrieval Mucins/metabolism
Chemicals
Glycoproteins Mucins
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Hansen J E
Center for Biological Sequence Analysis, The Technical University of Denmark, DK-2800 Lyngby, Denmark. janhan@cbs.dtu.dk
Lund O
Nilsson J
Rapacki K
Brunak S
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
DOI
10.1093/nar/26.1.387
Email
janhan@cbs.dtu.dk
Published
1998-01-01
Pages
387-9
Language
English
Region
England
NLM ID
0411011
PMCID
PMC147183
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/26.1.387 PMC Full Text View journal details
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