Abstract
Elongation factor Tu (EF-Tu) from Escherichia coli carrying the mutation G222D is unable to hydrolyze GTP on the ribosome and to sustain polypeptide synthesis at near physiological Mg2+ concentration, although the interactions with guanine nucleotides and aminoacyl-tRNA are not changed significantly. GTPase and polypeptide synthesis activities are restored by increasing the Mg2+ concentration. Here we report a pre-steady-state kinetic study of the binding of the ternary complexes of wild-type and mutant EF-Tu with Phe-tRNA(Phe) and GTP to the A site of poly(U)-programed ribosomes. The kinetic parameters of initial binding to the ribosome and subsequent codon-anticodon interaction are similar for mutant and wild-type EF-Tu, independent of the Mg2+ concentration, suggesting that the initial interaction with the ribosome is not affected by the mutation. Codon recognition following initial binding is also not affected by the mutation. The main effect of the G222D mutation is the inhibition, at low Mg2+ concentration, of codon-induced structural transitions of the tRNA and, in particular, their transmission to EF-Tu that precedes GTP hydrolysis and the subsequent steps of A-site binding. Increasing the Mg2+ concentration to 10 mM restores the complete reaction sequence of A-site binding at close to wild-type rates. The inhibition of the structural transitions is probably due to the interference of the negative charge introduced by the mutation with negative charges either of the 3' terminus of the tRNA, bound in the vicinity of the mutated amino acid in domain 2 of EF-Tu, or of the ribosome. Increasing the Mg2+ concentration appears to overcome the inhibition by screening the negative charges.
MeSH Terms
Codon
Enzyme Activation
Escherichia coli/metabolism
GTP Phosphohydrolase-Linked Elongation Factors/metabolism
Guanosine Triphosphate/metabolism
Guanylyl Imidodiphosphate/metabolism
Kinetics
Magnesium/metabolism
Models, Structural
Models, Theoretical
Mutagenesis, Site-Directed
Peptide Elongation Factor Tu/biosynthesis,chemistry,metabolism
Point Mutation
Protein Conformation
Protein Structure, Secondary
RNA, Transfer, Amino Acyl/metabolism
RNA, Transfer, Phe/metabolism
Recombinant Proteins/biosynthesis,chemistry,metabolism
Ribosomes/metabolism
Thermus/metabolism
Chemicals
Codon
RNA, Transfer, Amino Acyl
RNA, Transfer, Phe
Recombinant Proteins
Guanylyl Imidodiphosphate
Guanosine Triphosphate
GTP Phosphohydrolase-Linked Elongation Factors
Peptide Elongation Factor Tu
Magnesium
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Vorstenbosch E
Leiden Institute of Chemistry, Department of Biochemistry, Leiden University, The Netherlands.
Pape T
Rodnina M V
Kraal B
Wintermeyer W
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