Home LiteratureArticle Details
PMID: 896473 Published · ppublish English Journal Article

A program for least squares analysis of reassociation and hybridization data.

Nucleic acids research ·Vol. 4 ·No. 6 ·1977-06-00 ·Pages 1727-37

Pearson WR, Davidson EH, Britten RJ

Abstract

A computer program is described for the rapid calculation of least squares solutions for data fitted to different functions normally used in reassociation and hybridization kinetic measurements. The equations for the fraction not reacted as a function of Cot follow: First order, exp(-kCot); second order, (1+kCot)-1; variable order, (1+kCot)-n; approximate fraction of DNA sequence remaining single stranded, (1+kCot)-.44; and a function describing the pairing of tracer when the rate constant for the tracer (k) is distinct from the driver rate constant (kd): (formula: see text). Several components may be used for most of these functional forms. The standard deviations of the individual parameters at the solutions are calculated.

MeSH Terms
Computers Kinetics Models, Biological Nucleic Acid Hybridization Nucleic Acid Renaturation Nucleic Acids
Chemicals
Nucleic Acids
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Pearson W R
Davidson E H
Britten R J
References (10)
10 references, click to expand
  1. Organization, transcription, and regulation in the animal genome.
    Q Rev Biol. 1973 Dec;48(4):565-613 PMID: 4592421
  2. Complexity of cytoplasmic RNA in different mouse tissues measured by hybridization of polyadenylated RNA to complementary DNA.
    Biochemistry. 1975 Apr 8;14(7):1379-85 PMID: 47757
  3. Structural gene sets active in embryos and adult tissues of the sea urchin.
    Cell. 1976 Apr;7(4):487-505 PMID: 986248
  4. Comparative aspects of DNA organization in Metazoa.
    Chromosoma. 1975 Jul 21;51(3):253-9 PMID: 238803
  5. A measurement of the sequence complexity of polysomal messenger RNA in sea urchin embryos.
    Cell. 1974 May;2(1):9-20 PMID: 4411655
  6. Three abundance classes in HeLa cell messenger RNA.
    Nature. 1974 Jul 19;250(463):199-204 PMID: 4855195
  7. Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation.
    Proc Natl Acad Sci U S A. 1976 Feb;73(2):415-9 PMID: 1108024
  8. Studies on nucleic acid reassociation kinetics: reactivity of single-stranded tails in DNA-DNA renaturation.
    Proc Natl Acad Sci U S A. 1975 Dec;72(12):4805-9 PMID: 1108002
  9. Structural genes adjacent to interspersed repetitive DNA sequences.
    Cell. 1975 Mar;4(3):217-38 PMID: 1122554
  10. Kinetics of renaturation of DNA.
    J Mol Biol. 1968 Feb 14;31(3):349-70 PMID: 5637197
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1977-06-00
Pages
1727-37
Language
English
Region
England
NLM ID
0411011
PMCID
PMC342517
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com