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PMID: 8568818 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Conformational analysis of D1 dopamine receptor agonists: pharmacophore assessment and receptor mapping.

Journal of medicinal chemistry ·Vol. 39 ·No. 1 ·1996-01-05 ·Pages 285-96

Mottola DM, Laiter S, Watts VJ, Tropsha A, Wyrick SD, Nichols DE, Mailman RB

Abstract

Compute-aided conformational analysis was used to characterize the agonist pharmacophore for D1 dopamine receptor recognition and activation. Dihydrexidine (DHX), a high-affinity full agonist with limited conformational flexibility, served as a structural template that aided in determining a molecular geometry that would be common for other more flexible, biologically active agonists. The intrinsic activity of the drugs at D1 receptors was assessed by their ability to stimulate adenylate cyclase activity in rat striatal homogenates (the accepted measure of D1 receptor activation). In addition, affinity data on 12 agonists including six purported full agonists (dopamine, dihydrexidine, SKF89626, SKF82958, A70108, and A77636), as well as six less efficacious structural analogs, were obtained from D1 dopamine radioreceptor-binding assays. The active analog approach to pharmacophore building was applied as implemented in the SYBYL software package. Conformational analysis and molecular mechanics calculations were used to determine the lowest energy conformation of the active analogs (i.e., full agonists), as well as the conformations of each compound that displayed a common pharmacophoric geometry. It is hypothesized that DHX and other full agonists may share a D1 pharmacophore made up of two hydroxy groups, the nitrogen atom (ca. 7 A from the oxygen of m-hydroxyl) and the accessory ring system characterized by the angle between its plane and that of the catechol ring (except for dopamine and A77636). For all full agonists (DHX, SKF89626, SKF82958, A70108, A77636, and dopamine), the energy difference between the lowest energy conformer and those that displayed a common pharmacophore geometry was relatively small (< 5 kcal/mol). The pharmacophoric conformations of the full agonists were also used to infer the shape of the receptor binding site. Based on the union of the van der Waals density maps of the active analogs, the excluded receptor volume was calculated. Various inactive analogs (partial agonists with D1 K0.5 > 300 nM) subsequently were used to define the receptor essential volume (i.e., sterically intolerable receptor regions). These volumes, together with the pharmacophore results, were integrated into a three-dimensional model estimating the D1 receptor active site topography.

MeSH Terms
Adenylyl Cyclases/metabolism Animals Brain/drug effects,metabolism Computer Simulation Dopamine/pharmacology Dopamine Agonists/chemistry,metabolism,pharmacology Ligands Molecular Conformation Molecular Structure Phenanthridines/chemistry,pharmacology Rats Receptors, Dopamine D1/agonists,chemistry,metabolism Software Structure-Activity Relationship
Chemicals
Dopamine Agonists Ligands Phenanthridines Receptors, Dopamine D1 dihydrexidine Adenylyl Cyclases Dopamine
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Mottola D M
Brain and Development Research Center, School of Medicine, University of North Carolina, Chapel Hill, USA.
Laiter S
Watts V J
Tropsha A
Wyrick S D
Nichols D E
Mailman R B
Article Info
Journal
Journal of medicinal chemistry
Abbr.
J Med Chem
ISSN
0022-2623
Published
1996-01-05
Pages
285-96
Language
English
Region
United States
NLM ID
9716531
Subset
IM
Grants
NICHD NIH HHS · HD03310 · United States
NIMH NIH HHS · MH40537 · United States
NIMH NIH HHS · MH42705 · United States
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