Home LiteratureArticle Details
PMID: 8380085 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

The extreme C terminus of herpes simplex virus DNA polymerase is crucial for functional interaction with processivity factor UL42 and for viral replication.

Journal of virology ·Vol. 67 ·No. 1 ·1993-01-00 ·Pages 398-406

Digard P, Bebrin WR, Weisshart K, Coen DM

Abstract

The herpes simplex virus DNA polymerase is composed of two subunits, a large catalytic subunit (Pol) and a smaller subunit (UL42) that increases the processivity of the holoenzyme. The interaction between the two polypeptides is of interest both for the mechanism by which it enables the enzyme to synthesize long stretches of DNA processively and as a possible target for the rational design of novel antiviral drugs. Here, we demonstrate through a combination of insertion and deletion mutagenesis that the carboxy-terminal 35 amino acids of Pol are crucial for binding UL42. The functional importance of the interaction was confirmed by the finding that a pol mutant defective for UL42 binding retained polymerase activity, but did not synthesize longer DNA products in the presence of UL42. Moreover, several association-incompetent mutants failed to complement the replication of a pol null mutant in a transient transfection assay, confirming that the Pol-UL42 interaction is necessary for virus replication in vivo and therefore a valid target for directed drug design.

Related Genes
MeSH Terms
Amino Acid Sequence Bacteriophage M13/metabolism Base Sequence DNA Mutational Analysis DNA, Viral/biosynthesis DNA-Directed DNA Polymerase/genetics,metabolism Exodeoxyribonucleases Gene Products, pol/genetics,metabolism Genetic Complementation Test Models, Molecular Molecular Sequence Data Mutagenesis Protein Structure, Secondary Simplexvirus/enzymology,growth & development Structure-Activity Relationship Viral Proteins/metabolism Virus Replication
Chemicals
DNA, Viral Gene Products, pol Viral Proteins DNA-Directed DNA Polymerase Exodeoxyribonucleases DNA polymerase, Simplexvirus
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Digard P
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115.
Bebrin W R
Weisshart K
Coen D M
References (36)
36 references, click to expand
  1. Conversion of circular DNA to linear strands for mapping.
    Methods Enzymol. 1980;65(1):415-26 PMID: 6154867
  2. Identification of the herpes simplex virus DNA polymerase gene.
    Nature. 1977 Oct 13;269(5629):621-3 PMID: 199849
  3. Sensitivity of arabinosyladenine-resistant mutants of herpes simplex virus to other antiviral drugs and mapping of drug hypersensitivity mutations to the DNA polymerase locus.
    J Virol. 1985 Feb;53(2):477-88 PMID: 2982032
  4. DNA-binding protein associated with herpes simplex virus DNA polymerase.
    J Virol. 1985 Feb;53(2):501-8 PMID: 2578573
  5. Sequence and mapping analyses of the herpes simplex virus DNA polymerase gene predict a C-terminal substrate binding domain.
    Proc Natl Acad Sci U S A. 1985 Dec;82(23):7969-73 PMID: 2999787
  6. Specific inhibition of herpesvirus ribonucleotide reductase by synthetic peptides.
    Nature. 1986 May 22-28;321(6068):439-41 PMID: 3012359
  7. Specific inhibition of herpesvirus ribonucleotide reductase by a nonapeptide derived from the carboxy terminus of subunit 2.
    Nature. 1986 May 22-28;321(6068):441-3 PMID: 3012360
  8. The 65,000-Mr DNA-binding and virion trans-inducing proteins of herpes simplex virus type 1.
    J Virol. 1987 Aug;61(8):2428-37 PMID: 3037105
  9. Nucleotide sequence of the DNA polymerase gene of herpes simplex virus type 2 and comparison with the type 1 counterpart.
    Gene. 1987;52(2-3):129-37 PMID: 3038677
  10. Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design.
    Proc Natl Acad Sci U S A. 1987 Dec;84(24):8898-902 PMID: 3122208
  11. A temperature-sensitive mutation in a herpes simplex virus type 1 gene required for viral DNA synthesis maps to coordinates 0.609 through 0.614 in UL.
    J Virol. 1988 Mar;62(3):715-21 PMID: 2828666
  12. Human DNA polymerase alpha gene expression is cell proliferation dependent and its primary structure is similar to both prokaryotic and eukaryotic replicative DNA polymerases.
    EMBO J. 1988 Jan;7(1):37-47 PMID: 3359994
  13. Expression of herpes simplex virus type 1 DNA polymerase gene by in vitro translation and effects of gene deletions on activity.
    J Virol. 1988 Sep;62(9):3224-32 PMID: 2841474
  14. Purification of the herpes simplex virus type 1 65-kilodalton DNA-binding protein: properties of the protein and evidence of its association with the virus-encoded DNA polymerase.
    J Virol. 1988 Aug;62(8):2874-83 PMID: 2839706
  15. The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins.
    Science. 1988 Jun 24;240(4860):1759-64 PMID: 3289117
  16. Functional regions and structural features of the gB glycoprotein of herpes simplex virus type 1. An analysis of linker insertion mutants.
    J Mol Biol. 1988 Jun 5;201(3):575-88 PMID: 2843650
  17. Resistance to antiviral drugs: the end of innocence.
    N Engl J Med. 1989 Feb 2;320(5):313-4 PMID: 2536138
  18. Evidence that the leucine zipper is a coiled coil.
    Science. 1989 Jan 27;243(4890):538-42 PMID: 2911757
  19. Transcription-inhibition and RNA-binding domains of influenza A virus matrix protein mapped with anti-idiotypic antibodies and synthetic peptides.
    J Virol. 1989 Sep;63(9):3586-94 PMID: 2474671
  20. Interference with the assembly of a virus-host transcription complex by peptide competition.
    Nature. 1990 Mar 15;344(6263):257-9 PMID: 2156166
  21. Enzymatic activities of overexpressed herpes simplex virus DNA polymerase purified from recombinant baculovirus-infected insect cells.
    Nucleic Acids Res. 1990 Mar 11;18(5):1207-15 PMID: 2157192
  22. Isolation and characterization of herpes simplex virus mutants containing engineered mutations at the DNA polymerase locus.
    J Virol. 1990 May;64(5):2208-16 PMID: 2157881
  23. How calmodulin binds its targets: sequence independent recognition of amphiphilic alpha-helices.
    Trends Biochem Sci. 1990 Feb;15(2):59-64 PMID: 2186516
  24. Functional interaction between the herpes simplex-1 DNA polymerase and UL42 protein.
    J Biol Chem. 1990 Jul 5;265(19):11227-32 PMID: 2193033
  25. "Macromolecular crowding": thermodynamic consequences for protein-protein interactions within the T4 DNA replication complex.
    J Biol Chem. 1990 Sep 5;265(25):15160-7 PMID: 2168402
  26. A novel functional domain of an alpha-like DNA polymerase. The binding site on the herpes simplex virus polymerase for the viral UL42 protein.
    J Biol Chem. 1990 Oct 15;265(29):17393-6 PMID: 2170378
  27. The herpes simplex virus type 1 UL42 gene product: a subunit of DNA polymerase that functions to increase processivity.
    J Virol. 1990 Dec;64(12):5976-87 PMID: 2173776
  28. Isolation of a herpes simplex virus type 1 mutant deleted for the essential UL42 gene and characterization of its null phenotype.
    J Virol. 1991 Feb;65(2):700-10 PMID: 1846193
  29. Protein-protein interactions with the acidic COOH terminus of the single-stranded DNA-binding protein of the bacteriophage T4.
    Proc Natl Acad Sci U S A. 1991 May 1;88(9):4010-4 PMID: 2023949
  30. Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme.
    J Biol Chem. 1991 Jun 15;266(17):11328-34 PMID: 2040637
  31. Compilation and alignment of DNA polymerase sequences.
    Nucleic Acids Res. 1991 Aug 11;19(15):4045-57 PMID: 1870963
  32. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.
    Science. 1991 Oct 25;254(5031):539-44 PMID: 1948029
  33. Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp.
    Cell. 1992 May 1;69(3):425-37 PMID: 1349852
  34. DNA synthesis and DNA polymerase activity of herpes simplex virus type 1 temperature-sensitive mutants.
    J Virol. 1975 Sep;16(3):498-507 PMID: 169388
  35. Nonstructural proteins of herpes simplex virus. I. Purification of the induced DNA polymerase.
    J Virol. 1977 Nov;24(2):618-26 PMID: 21304
  36. Linker tailing: unphosphorylated linker oligonucleotides for joining DNA termini.
    DNA. 1984;3(2):173-82 PMID: 6327214
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1993-01-00
Pages
398-406
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC237376
Subset
IM
Grants
NIAID NIH HHS · R01 AI19838 · United States
NCRR NIH HHS · S07 RR05381 · United States
NIAID NIH HHS · U01 AI26077 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com