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PMID: 8219741 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Application of nonlinear sampling schemes to COSY-type spectra.

Journal of biomolecular NMR ·Vol. 3 ·No. 5 ·1993-09-00 ·Pages 569-76

Schmieder P, Stern AS, Wagner G, Hoch JC

Abstract

Nonlinear sampling along the t1 dimension is applied to COSY-type spectra. The sine dependence of the time domain signals for the cross peaks is matched by a nonlinear sampling scheme that samples most densely around the maximum of the sine function. Data are processed by maximum entropy reconstruction, using a modified implementation of the 'Cambridge' algorithm of Skilling and Bryan. The procedure is demonstrated for P.E. COSY spectra recorded on a cyclic hexapeptide and on a 126-residue domain of the protein villin. The number of t1 values in the nonlinearly sampled experiments was reduced by a factor of four compared to linear sampling. The sensitivity and resolution of the resulting spectra are comparable to those achieved by conventional methods. The method described can thus significantly reduce the measuring time for COSY-type spectra.

MeSH Terms
Algorithms Amino Acid Sequence Magnetic Resonance Spectroscopy/methods Mathematics Models, Theoretical Molecular Sequence Data Oligopeptides/chemistry Peptides, Cyclic/chemistry Thermodynamics
Chemicals
Oligopeptides Peptides, Cyclic cyclo(Ala-Phe-Trp-Lys-Val-Phe)
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Schmieder P
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115.
Stern A S
Wagner G
Hoch J C
References (3)
3 references, click to expand
  1. Modern spectrum analysis in nuclear magnetic resonance: alternatives to the Fourier transform.
    Methods Enzymol. 1989;176:216-41 PMID: 2811688
  2. Villin sequence and peptide map identify six homologous domains.
    Proc Natl Acad Sci U S A. 1988 Jul;85(14):4986-90 PMID: 2839826
  3. Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins.
    Biochem Biophys Res Commun. 1983 Jun 29;113(3):967-74 PMID: 6307308
Article Info
Journal
Journal of biomolecular NMR
Abbr.
J Biomol NMR
ISSN
0925-2738
Published
1993-09-00
Pages
569-76
Language
English
Region
Netherlands
NLM ID
9110829
Subset
IM
Grants
NIGMS NIH HHS · P01 GM047467 · United States
NIGMS NIH HHS · GM47467 · United States
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