Home LiteratureArticle Details
PMID: 7988548 Published · ppublish English Journal Article

Protein splicing: an analysis of the branched intermediate and its resolution by succinimide formation.

The EMBO journal ·Vol. 13 ·No. 23 ·1994-12-01 ·Pages 5517-22

Xu MQ, Comb DG, Paulus H, Noren CJ, Shao Y, Perler FB

Abstract

Protein splicing involves the excision of an internal domain from a precursor protein and the ligation of the external domains so as to generate two new proteins. Study of this process has recently been facilitated by the isolation of a precursor and a branched intermediate from a thermophilic protein splicing element expressed in a foreign protein context. Two aspects of protein splicing are examined in this paper. We demonstrate a succinimide at the C-terminus of the spliced internal protein, implicating cyclization of asparagine in resolution of the branched intermediate, and we identify an alkali-labile bond in the branched intermediate. A revised protein splicing model based on these experimental results is presented.

MeSH Terms
Alkalies Amino Acid Sequence Base Sequence Conserved Sequence DNA Primers Molecular Sequence Data Protein Processing, Post-Translational Proteins/chemistry,metabolism Sequence Homology, Amino Acid Succinimides/metabolism
Chemicals
Alkalies DNA Primers Proteins Succinimides succinimide
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Xu M Q
New England Biolabs, Inc., Beverly, MA 01915.
Comb D G
Paulus H
Noren C J
Shao Y
Perler F B
References (21)
21 references, click to expand
  1. Protein introns: a new home for endonucleases.
    Cell. 1992 Oct 16;71(2):183-6 PMID: 1330319
  2. Mutations at the putative junction sites of the yeast VMA1 protein, the catalytic subunit of the vacuolar membrane H(+)-ATPase, inhibit its processing by protein splicing.
    Biochem Biophys Res Commun. 1992 Oct 15;188(1):40-7 PMID: 1417861
  3. Protein splicing removes intervening sequences in an archaea DNA polymerase.
    Nucleic Acids Res. 1992 Dec 11;20(23):6153-7 PMID: 1475179
  4. Peptide splicing in the vacuolar ATPase subunit A from Candida tropicalis.
    J Biol Chem. 1993 Apr 5;268(10):7372-81 PMID: 8463270
  5. The curious case of protein splicing: mechanistic insights suggested by protein semisynthesis.
    Protein Sci. 1993 May;2(5):697-705 PMID: 8495192
  6. Protein splicing of the yeast TFP1 intervening protein sequence: a model for self-excision.
    EMBO J. 1993 Jun;12(6):2575-83 PMID: 8508780
  7. Introns as mobile genetic elements.
    Annu Rev Biochem. 1993;62:587-622 PMID: 8352597
  8. In vitro protein splicing of purified precursor and the identification of a branched intermediate.
    Cell. 1993 Dec 31;75(7):1371-7 PMID: 8269515
  9. Protein splicing: excision of intervening sequences at the protein level.
    Bioessays. 1993 Oct;15(10):667-74 PMID: 8274142
  10. Evidence of selection for protein introns in the recAs of pathogenic mycobacteria.
    EMBO J. 1994 Feb 1;13(3):699-703 PMID: 7508863
  11. Protein splicing elements: inteins and exteins--a definition of terms and recommended nomenclature.
    Nucleic Acids Res. 1994 Apr 11;22(7):1125-7 PMID: 8165123
  12. The ins and outs of protein splicing elements.
    Mol Microbiol. 1994 May;12(3):359-63 PMID: 8065257
  13. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  14. Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides. Succinimide-linked reactions that contribute to protein degradation.
    J Biol Chem. 1987 Jan 15;262(2):785-94 PMID: 3805008
  15. Spontaneous peptide bond cleavage in aging alpha-crystallin through a succinimide intermediate.
    J Biol Chem. 1988 Dec 15;263(35):19020-3 PMID: 3198609
  16. Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae.
    J Biol Chem. 1990 Apr 25;265(12):6726-33 PMID: 2139027
  17. Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase.
    Science. 1990 Nov 2;250(4981):651-7 PMID: 2146742
  18. Novel structure of the recA locus of Mycobacterium tuberculosis implies processing of the gene product.
    J Bacteriol. 1991 Sep;173(18):5653-62 PMID: 1909321
  19. Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae.
    Nature. 1992 May 28;357(6376):301-6 PMID: 1534148
  20. Intervening sequences in an Archaea DNA polymerase gene.
    Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5577-81 PMID: 1608969
  21. Protein splicing in the maturation of M. tuberculosis recA protein: a mechanism for tolerating a novel class of intervening sequence.
    Cell. 1992 Oct 16;71(2):201-10 PMID: 1423588
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1994-12-01
Pages
5517-22
Language
English
Region
England
NLM ID
8208664
PMCID
PMC395513
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com