Home LiteratureArticle Details

PMID: 7937050 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

A comparative database of group I intron structures.

Nucleic acids research ·Vol. 22 ·No. 17 ·1994-09-00 ·Pages 3508-10

Damberger SH, Gutell RR

Abstract

We have created a database of comparatively derived group I intron secondary structure diagrams. This collection currently contains a broad sampling of phylogenetically and structurally similar and diverse structures from over 200 publicly available intron sequences. As more group I introns are sequenced and added to the database, we anticipate minor refinements in these secondary structure diagrams. These diagrams are directly accessible by computer as well as from the authors.

MeSH Terms

Base Sequence Databases, Factual Introns Molecular Sequence Data Nucleic Acid Conformation RNA, Ribosomal/chemistry,genetics

Chemicals

RNA, Ribosomal

Authors & Affiliations

2 authors, click to expand affiliations / ORCID

Damberger S H

MCD Biology, University of Colorado, Boulder 80309-0347.

Gutell R R

References (14)

14 references, click to expand

Making ends meet: a model for RNA splicing in fungal mitochondria.
Nature. 1982 Dec 23;300(5894):719-24 PMID: 6757759
Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure.
Biochimie. 1982 Oct;64(10):867-81 PMID: 6817818
The intron of the mitochondrial 21S rRNA gene: distribution in different yeast species and sequence comparison between Kluyveromyces thermotolerans and Saccharomyces cerevisiae.
Mol Gen Genet. 1983;192(3):487-99 PMID: 6361491
Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review.
Gene. 1988 Dec 20;73(2):259-71 PMID: 3072259
DNA sequence analysis of the apocytochrome b gene of Podospora anserina: a new family of intronic open reading frame.
Curr Genet. 1989 Dec;16(5-6):407-18 PMID: 2611913
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9 PMID: 2112744
Representation of the secondary and tertiary structure of group I introns.
Nat Struct Biol. 1994 May;1(5):273-80 PMID: 7545072
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis.
J Mol Biol. 1990 Dec 5;216(3):585-610 PMID: 2258934
Bacterial origin of a chloroplast intron: conserved self-splicing group I introns in cyanobacteria.
Science. 1990 Dec 14;250(4987):1566-70 PMID: 2125747
An ancient group I intron shared by eubacteria and chloroplasts.
Science. 1990 Dec 14;250(4987):1570-3 PMID: 2125748
A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus.
Nucleic Acids Res. 1991 Aug 25;19(16):4429-36 PMID: 1886767
GenBank.
Nucleic Acids Res. 1993 Jul 1;21(13):2963-5 PMID: 8332518
In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence.
Cell. 1981 Dec;27(3 Pt 2):487-96 PMID: 6101203
Self-splicing of group I introns.
Annu Rev Biochem. 1990;59:543-68 PMID: 2197983

Article Info

Journal

Nucleic acids research

Abbr.

Nucleic Acids Res

ISSN

0305-1048

DOI

10.1093/nar/22.17.3508

Published

1994-09-00

Pages

3508-10

Language

English

Region

England

NLM ID

0411011

PMCID

PMC308312

Subset

Grants

NIGMS NIH HHS · GM48207 · United States

Databases

GENBANK

X00149, X55026, X56100

External Links

PubMed source DOI: 10.1093/nar/22.17.3508 PMC Full Text View journal details

Analysis Services

A comparative database of group I intron structures.

Contact

WeChat Official Account