Home LiteratureArticle Details
PMID: 7638183 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Ultrafast thermally induced unfolding of RNase A.

Phillips CM, Mizutani Y, Hochstrasser RM

Abstract

A temperature jump (T-jump) method capable of initiating thermally induced processes on the picosecond time scale in aqueous solutions is introduced. Protein solutions are heated by energy from a laser pulse that is absorbed by homogeneously dispersed molecules of the dye crystal violet. These act as transducers by releasing the energy as heat to cause a T-jump of up to 10 K with a time resolution of 70 ps. The method was applied to the unfolding of RNase A. At pH 5.7 and 59 degrees C, a T-jump of 3-6 K induced unfolding which was detected by picosecond transient infrared spectroscopy of the amide I region between 1600 and 1700 cm-1. The difference spectral profile at 3.5 ns closely resembled that found for the equilibrium (native-unfolded) states. The signal at 1633 cm-1, corresponding to the beta-sheet structure, achieved 15 +/- 2% of the decrease found at equilibrium, within 5.5 ns. However, no decrease in absorbance was detected until 1 ns after the T-ump. The disruption of beta-sheet therefore appears to be subject to a delay of approximately 1 ns. Prior to 1 ns after the T-jump, water might be accessing the intact hydrophobic regions.

MeSH Terms
Animals Cattle Hot Temperature Hydrogen Bonding In Vitro Techniques Kinetics Molecular Structure Pancreas/enzymology Protein Folding Protein Structure, Secondary Ribonuclease, Pancreatic/chemistry Solutions Spectroscopy, Fourier Transform Infrared Thermodynamics Water
Chemicals
Solutions Water Ribonuclease, Pancreatic
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Phillips C M
Department of Chemistry, University of Pennsylvania, Philadelphia 19104, USA.
Mizutani Y
Hochstrasser R M
References (30)
30 references, click to expand
  1. Characterization of the unfolding of ribonuclease A in aqueous methanol solvents.
    Biochemistry. 1987 Mar 24;26(6):1665-71 PMID: 3593684
  2. Protein folding studied using hydrogen-exchange labeling and two-dimensional NMR.
    Annu Rev Biophys Biomol Struct. 1992;21:243-65 PMID: 1525469
  3. NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A.
    Nature. 1988 Oct 20;335(6192):694-9 PMID: 2845278
  4. Temperature-jump NMR study of protein folding: ribonuclease A at low pH.
    J Biomol NMR. 1991 May;1(1):65-70 PMID: 1841690
  5. From independent modules to molten globules: observations on the nature of protein folding intermediates.
    Proc Natl Acad Sci U S A. 1993 Mar 15;90(6):2099-100 PMID: 8460114
  6. Perchlorate-induced denaturation of ribonuclease A: investigation of possible folding intermediates.
    Biochemistry. 1993 May 4;32(17):4604-8 PMID: 8387338
  7. Molecular dynamics analysis of a ribonuclease C-peptide analogue.
    Biopolymers. 1993 Oct;33(10):1567-80 PMID: 8218924
  8. Guanidinium chloride induction of partial unfolding in amide proton exchange in RNase A.
    Science. 1993 Nov 5;262(5135):873-6 PMID: 8235609
  9. Fast events in protein folding initiated by nanosecond laser photolysis.
    Proc Natl Acad Sci U S A. 1993 Dec 15;90(24):11860-4 PMID: 8265638
  10. Thermally denatured ribonuclease A retains secondary structure as shown by FTIR.
    Biochemistry. 1994 Feb 15;33(6):1351-5 PMID: 8312253
  11. A very fast phase in the refolding of disulfide-intact ribonuclease A: implications for the refolding and unfolding pathways.
    Biochemistry. 1994 Mar 8;33(9):2516-30 PMID: 8117713
  12. Molecular dynamics simulation of protein denaturation: solvation of the hydrophobic cores and secondary structure of barnase.
    Proc Natl Acad Sci U S A. 1994 Mar 1;91(5):1746-50 PMID: 8127876
  13. How does a protein fold?
    Nature. 1994 May 19;369(6477):248-51 PMID: 7710478
  14. The structure of water and the stability of the secondary structure in biological molecules. An infrared and proton magnetic resonance study.
    J Phys Chem. 1966 Jan;70(1):270-6 PMID: 5900733
  15. Laser Raman spectroscopic studies of the thermal unfolding of ribonuclease A.
    Biochemistry. 1976 May 4;15(9):1889-97 PMID: 5118
  16. Test of the extended two-state model for the kinetic intermediates observed in the folding transition of ribonuclease A.
    J Mol Biol. 1978 Jan 25;118(3):317-30 PMID: 633363
  17. The rate of interconversion between the two unfolded forms of ribonuclease A does not depend on guanidinium chloride concentration.
    J Mol Biol. 1979 Sep 15;133(2):285-7 PMID: 231661
  18. Mechanism of folding of ribonuclease A. Slow refolding is a sequential reaction via structural intermediates.
    Biochemistry. 1983 Sep 27;22(20):4690-6 PMID: 6626523
  19. Right ventricular myocardial infarction with ventricular septal rupture.
    Am Heart J. 1984 Jun;107(6):1257-9 PMID: 6720553
  20. Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins.
    Adv Protein Chem. 1986;38:181-364 PMID: 3541539
  21. Heat capacity and conformation of proteins in the denatured state.
    J Mol Biol. 1989 Feb 20;205(4):737-50 PMID: 2538636
  22. Direct observations of ligand dynamics in hemoglobin by subpicosecond infrared spectroscopy.
    Proc Natl Acad Sci U S A. 1989 Nov;86(21):8387-91 PMID: 2554314
  23. Intermediates in the folding reactions of small proteins.
    Annu Rev Biochem. 1990;59:631-60 PMID: 2197986
  24. Temperature dependence of dynamics of hydrated myoglobin. Comparison of force field calculations with neutron scattering data.
    J Mol Biol. 1990 Oct 5;215(3):439-55 PMID: 2231714
  25. Early folding intermediate of ribonuclease A.
    Proc Natl Acad Sci U S A. 1990 Nov;87(21):8197-201 PMID: 2236032
  26. Molecular dynamics simulations of the unfolding of an alpha-helical analogue of ribonuclease A S-peptide in water.
    Biochemistry. 1991 Apr 23;30(16):3864-71 PMID: 2018759
  27. Hydrogen exchange in thermally denatured ribonuclease A.
    Biochemistry. 1991 Oct 15;30(41):9907-14 PMID: 1911782
  28. The thermal denaturation of ribonuclease A in aqueous-methanol solvents.
    Biochim Biophys Acta. 1992 Feb 26;1119(2):205-10 PMID: 1540654
  29. Denatured states of ribonuclease A have compact dimensions and residual secondary structure.
    Biochemistry. 1992 Sep 8;31(35):8329-35 PMID: 1525171
  30. Secondary structure of proteins through circular dichroism spectroscopy.
    Annu Rev Biophys Biophys Chem. 1988;17:145-66 PMID: 3293583
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1995-08-01
Pages
7292-6
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC41325
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com