Home LiteratureArticle Details
PMID: 7489512 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The large genome segment of dsRNA bacteriophage phi6 is the key regulator in the in vitro minus and plus strand synthesis.

RNA (New York, N.Y.) ·Vol. 1 ·No. 5 ·1995-07-00 ·Pages 510-8

Frilander M, Poranen M, Bamford DH

Abstract

Bacteriophage phi6 is a double-stranded RNA (dsRNA) virus that has a genome composed of three linear dsRNA segments (L, M, S). These are encapsidated into a dodecahedral procapsid particle consisting of proteins P1, P2, P4, and P7. Empty preformed procapsids are able to package the plus-sense single-stranded RNA (ssRNA) of each genome segment, to synthesize the corresponding minus strands ("replication") to form dsRNA segments, and to continue to the plus strand synthesis ("transcription") in which the dsRNA segments are used as templates in production of plus-sense ssRNA. In this study, we have investigated the requirements for the switch-on of minus and plus strand syntheses. We show that there exists an inverse relationship between regulation of the ssRNA packaging and minus strand synthesis. The packaging of single-stranded l, which has previously been shown to be packaged as the last, is the necessary signal for the onset of the minus strand synthesis. The absolute requirement for plus strand synthesis is minus strand synthesis of l, but in addition, the minus strand synthesis of m and the packaging of s segment are needed for efficient plus strand synthesis. Furthermore, the second nucleotide at the 5'-end of each segment regulates the extent of the transcription.

MeSH Terms
Bacteriophage phi 6/genetics,growth & development Base Sequence Capsid/metabolism Genome, Viral Models, Genetic Molecular Sequence Data RNA, Double-Stranded/biosynthesis RNA, Viral/biosynthesis RNA-Dependent RNA Polymerase/metabolism Transcription, Genetic Virus Assembly Virus Replication
Chemicals
RNA, Double-Stranded RNA, Viral RNA-Dependent RNA Polymerase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Frilander M
Department of Biosciences, University of Helsinki, Finland.
Poranen M
Bamford D H
References (34)
34 references, click to expand
  1. An improved filamentous helper phage for generating single-stranded plasmid DNA.
    Gene. 1986;45(3):333-8 PMID: 3026919
  2. Identification of the packaging regions within the genomic RNA segments of bacteriophage phi 6.
    Virology. 1994 Apr;200(1):42-7 PMID: 8128636
  3. Synthesis of complementary strands of heterologous RNAs with Qbeta replicase.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1371-5 PMID: 4524642
  4. RNA binding, packaging and polymerase activities of the different incomplete polymerase complex particles of dsRNA bacteriophage phi 6.
    J Mol Biol. 1995 Jun 9;249(3):545-54 PMID: 7783210
  5. Fitness of RNA virus decreased by Muller's ratchet.
    Nature. 1990 Nov 29;348(6300):454-5 PMID: 2247152
  6. Minus-strand RNA synthesis by the segmented double-stranded RNA bacteriophage phi 6 requires continuous protein synthesis.
    Virology. 1990 Jul;177(1):281-8 PMID: 2353456
  7. Purified phi 6 nucleocapsids are capable of productive infection of host cells with partially disrupted outer membranes.
    Virology. 1990 Oct;178(2):364-72 PMID: 2219699
  8. The molecular weight of bacteriophage phi 6 and its nucleocapsid.
    Virology. 1980 Jun;103(2):376-85 PMID: 7385585
  9. In vitro packaging of the bacteriophage phi 6 ssRNA genomic precursors.
    Virology. 1991 Apr;181(2):589-94 PMID: 2014638
  10. Protein P4 of the bacteriophage phi 6 procapsid has a nucleoside triphosphate-binding site with associated nucleoside triphosphate phosphohydrolase activity.
    J Virol. 1992 Oct;66(10):6220-2 PMID: 1326667
  11. Generation of infectious nucleocapsids by in vitro assembly of the shell protein on to the polymerase complex of the dsRNA bacteriophage phi 6.
    J Mol Biol. 1991 Apr 5;218(3):569-81 PMID: 2016747
  12. In vitro transcription of the double-stranded RNA bacteriophage phi 6 is influenced by purine NTPs and calcium.
    Virology. 1995 Mar 10;207(2):400-8 PMID: 7886944
  13. In vitro replication, packaging, and transcription of the segmented double-stranded RNA genome of bacteriophage phi 6: studies with procapsids assembled from plasmid-encoded proteins.
    J Bacteriol. 1990 Oct;172(10):5774-82 PMID: 2211512
  14. In vitro assembly of infectious nucleocapsids of bacteriophage phi 6: formation of a recombinant double-stranded RNA virus.
    Proc Natl Acad Sci U S A. 1990 Dec;87(23):9173-7 PMID: 2251260
  15. RNA structure and heterologous recombination in the double-stranded RNA bacteriophage phi 6.
    J Virol. 1993 Aug;67(8):4914-22 PMID: 8331732
  16. RNA-protein complexes responsible for replication and transcription of the double-stranded RNA bacteriophage phi 6.
    Virology. 1990 Oct;178(2):509-19 PMID: 2120847
  17. Rapid and efficient site-specific mutagenesis without phenotypic selection.
    Proc Natl Acad Sci U S A. 1985 Jan;82(2):488-92 PMID: 3881765
  18. In vitro packaging and replication of individual genomic segments of bacteriophage phi 6 RNA.
    J Virol. 1992 May;66(5):2611-16 PMID: 1560520
  19. Production of a polyhedral particle in Escherichia coli from a cDNA copy of the large genomic segment of bacteriophage phi 6.
    J Virol. 1988 Jan;62(1):181-7 PMID: 3275432
  20. Bacteriophage phi6: a Lipid-Containing Virus of Pseudomonas phaseolicola.
    J Virol. 1973 May;11(5):799-805 PMID: 16789137
  21. In vitro packaging of the single-stranded RNA genomic precursors of the segmented double-stranded RNA bacteriophage phi 6: the three segments modulate each other's packaging efficiency.
    J Mol Biol. 1995 Feb 24;246(3):418-28 PMID: 7877165
  22. Detection of bacteriophage phi 6 minus-strand RNA and novel mRNA isoconformers synthesized in vivo and in vitro, by strand-separating agarose gels.
    Virology. 1990 Jul;177(1):273-80 PMID: 2353455
  23. Template-dependent, in vitro replication of rotavirus RNA.
    J Virol. 1994 Nov;68(11):7030-9 PMID: 7933085
  24. Molecular mechanisms of manganese mutagenesis.
    Proc Natl Acad Sci U S A. 1984 Dec;81(23):7378-82 PMID: 6095289
  25. Dependence of minus-strand synthesis on complete genomic packaging in the double-stranded RNA bacteriophage phi 6.
    J Virol. 1992 Aug;66(8):5013-7 PMID: 1629962
  26. In vitro replication and transcription of the segmented double-stranded RNA bacteriophage phi 6.
    Virology. 1988 Aug;165(2):489-98 PMID: 3407151
  27. Transcriptional regulation of three double-stranded RNA segments of bacteriophage phi 6 in vitro.
    J Virol. 1983 Apr;46(1):196-203 PMID: 6827650
  28. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  29. Displacement of parental RNA strands during in vitro transcription by bacteriophage phi 6 nucleocapsids.
    Cell. 1980 Apr;19(4):855-62 PMID: 7379123
  30. Bacteriophage phi 6 envelope elucidated by chemical cross-linking, immunodetection, and cryoelectron microscopy.
    Virology. 1992 Oct;190(2):635-44 PMID: 1519356
  31. In vitro packaging of individual genomic segments of bacteriophage phi 6 RNA: serial dependence relationships.
    J Virol. 1995 May;69(5):2926-31 PMID: 7707518
  32. The nucleocapsid of the lipid-containing double-stranded RNA bacteriophage phi 6 contains a protein skeleton consisting of a single polypeptide species.
    J Virol. 1987 Aug;61(8):2362-7 PMID: 3599179
  33. RNA structural requirements for stability and minus-strand synthesis in the dsRNA bacteriophage phi 6.
    Virology. 1994 Jul;202(1):258-63 PMID: 8009837
  34. Heterologous recombination in the double-stranded RNA bacteriophage phi 6.
    J Virol. 1992 May;66(5):2605-10 PMID: 1560519
Article Info
Journal
RNA (New York, N.Y.)
Abbr.
RNA
ISSN
1355-8382
Published
1995-07-00
Pages
510-8
Language
English
Region
United States
NLM ID
9509184
PMCID
PMC1482425
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com