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PMID: 7248456 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Structural dynamics of liganded myoglobin.

Biophysical journal ·Vol. 32 ·No. 1 ·1980-10-00 ·Pages 465-83

Frauenfelder H, Petsko GA

Abstract

X-ray crystallography can reveal the magnitudes and principal directions of the mean-square displacements of every atom in a protein. This structural information is complementary to the temporal information obtainable by spectroscopic techniques such as nuclear magnetic resonance. Determination of the temperature dependence of the mean-square displacements makes it possible to separate large conformational motions from simple thermal vibrations. The contribution of crystal lattice disorder to the overall apparent displacement can be estimated by Mössbauer spectroscopy. This technique has been applied to high resolution x-ray diffraction data from sperm whale myoglobin in its Met iron and oxy cobalt forms. Both crystal structures display regions of large conformational motions, particularly at the chain termini and in the region of the proximal histidine. Overall, the mean-square displacement increases with increasing distance from the center of gravity of the molecule. Some regions of the heme pocket in oxy cobalt myoglobin are more rigid than the corresponding regions in Met myoglobin.

MeSH Terms
Animals Binding Sites Ligands Models, Molecular Myoglobin Protein Binding Protein Conformation Whales X-Ray Diffraction
Chemicals
Ligands Myoglobin
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Frauenfelder H
Petsko G A
References (17)
17 references, click to expand
  1. Design of a diffractometer and flow cell system for X-ray analysis of crystalline proteins with applications to the crystal chemistry of ribonuclease-S.
    J Mol Biol. 1967 Aug 14;27(3):563-78 PMID: 6049685
  2. Hydrogen exchange.
    Annu Rev Biochem. 1972;41:903-24 PMID: 4563445
  3. Relation between structure, co-operativity and spectra in a model of hemoglobin action.
    J Mol Biol. 1973 Jun 25;77(2):207-22 PMID: 4765360
  4. Protein crystallography at sub-zero temperatures: cryo-protective mother liquors for protein crystals.
    J Mol Biol. 1975 Aug 15;96(3):381-92 PMID: 240944
  5. Dynamics of a protein matrix revealed by fluorescence quenching.
    Proc Natl Acad Sci U S A. 1975 Sep;72(9):3290-4 PMID: 810800
  6. Neutron diffraction analysis of myoglobin: structure of the carbon monoxide derivative.
    Science. 1975 Nov 7;190(4214):568-70 PMID: 1188354
  7. Dynamics of ligand binding to myoglobin.
    Biochemistry. 1975 Dec 2;14(24):5355-73 PMID: 1191643
  8. The design of computing systems for molecular modeling.
    Annu Rev Biophys Bioeng. 1976;5:477-510 PMID: 782343
  9. Dynamics of folded proteins.
    Nature. 1977 Jun 16;267(5612):585-90 PMID: 301613
  10. Structure of oxymyoglobin.
    Nature. 1978 May 18;273(5659):247-8 PMID: 643089
  11. Protein structural fluctuations during a period of 100 ps.
    Nature. 1979 Feb 15;277(5697):578 PMID: 763343
  12. Aliphatic groups of sperm whale myoglobin: 13C NMR study.
    Proc Natl Acad Sci U S A. 1979 Mar;76(3):1059-63 PMID: 286293
  13. Temperature-dependent X-ray diffraction as a probe of protein structural dynamics.
    Nature. 1979 Aug 16;280(5723):558-63 PMID: 460437
  14. Crystallographic studies of the dynamic properties of lysozyme.
    Nature. 1979 Aug 16;280(5723):563-8 PMID: 460438
  15. Dynamic information from protein crystallography. An analysis of temperature factors from refinement of the hen egg-white lysozyme structure.
    J Mol Biol. 1979 May 25;130(3):231-52 PMID: 469942
  16. Hydrogen exchange kinetics and internal motions in proteins and nucleic acids.
    Annu Rev Biophys Bioeng. 1979;8:99-127 PMID: 38741
  17. Crystalline state disorder and hyperfine component line widths in ferric hemoglobin chains.
    Biophys J. 1979 Feb;25(2 Pt 1):301-11 PMID: 233574
Article Info
Journal
Biophysical journal
Abbr.
Biophys J
ISSN
0006-3495
Published
1980-10-00
Pages
465-83
Language
English
Region
United States
NLM ID
0370626
PMCID
PMC1327341
Subset
IM
Grants
NIGMS NIH HHS · GM 18051 · United States
NIGMS NIH HHS · GM 27123 · United States
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