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PMID: 6320100 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

A convenient and adaptable package of computer programs for DNA and protein sequence management, analysis and homology determination.

Nucleic acids research ·Vol. 12 ·No. 1 Pt 2 ·1984-01-11 ·Pages 643-55

Pustell J, Kafatos FC

Abstract

We describe the further development of a widely used package of DNA/protein sequence analysis programs (1). Important revisions have been made based on user experience, and new features, multi-user capability, and a set of large scale homology programs have been added. The programs are very user friendly, economical of time and memory, and extremely transportable. They are written in a version of FORTRAN which will compile, with a few defined changes, as FORTRAN 66, FORTRAN 77, FORTRAN IV, FORTRAN IV+, and others. They are running on a variety of microcomputers, minicomputers, and mainframes, in both single user and multi-user configurations.

MeSH Terms
Amino Acid Sequence Animals Base Sequence Computers DNA/genetics DNA Restriction Enzymes Insulin/genetics Methods Microcomputers Proteins/genetics Rats Software
Chemicals
Insulin Proteins DNA DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Pustell J
Kafatos F C
References (7)
7 references, click to expand
  1. A general method applicable to the search for similarities in the amino acid sequence of two proteins.
    J Mol Biol. 1970 Mar;48(3):443-53 PMID: 5420325
  2. The structure and evolution of the two nonallelic rat preproinsulin genes.
    Cell. 1979 Oct;18(2):545-58 PMID: 498284
  3. Sequence of the human insulin gene.
    Nature. 1980 Mar 6;284(5751):26-32 PMID: 6243748
  4. Statistical characterization of nucleic acid sequence functional domains.
    Nucleic Acids Res. 1983 Apr 11;11(7):2205-20 PMID: 6835847
  5. A convenient and adaptable package of DNA sequence analysis programs for microcomputers.
    Nucleic Acids Res. 1982 Jan 11;10(1):51-9 PMID: 6278412
  6. A simple method for displaying the hydropathic character of a protein.
    J Mol Biol. 1982 May 5;157(1):105-32 PMID: 7108955
  7. Computer analysis of nucleic acids and proteins.
    Methods Enzymol. 1980;65(1):595-609 PMID: 6154871
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1984-01-11
Pages
643-55
Language
English
Region
England
NLM ID
0411011
PMCID
PMC321079
Subset
IM
Analysis Services
Analysis Services

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