The subunit stoichiometry of oligomeric enzymes can be determined by immuno-electron microscopy using monoclonal antibodies against the individual subunits. Monoclonal antibodies against native F1-ATPase of Escherichia coli were prepared that were specific for the alpha-subunit. The immune complexes of F1 and monoclonal antibodies were isolated. Electron microscopy revealed the presence of three immunoglobulins per molecule of F1-ATPase. This unequivocally demonstrates an alpha 3 stoichiometry for the F1-ATPase of E. coli.
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