Home LiteratureArticle Details
PMID: 4022769 Published · ppublish English Journal Article

A highly polymorphic region 3' to the human type II collagen gene.

Nucleic acids research ·Vol. 13 ·No. 13 ·1985-07-11 ·Pages 4613-22

Stoker NG, Cheah KS, Griffin JR, Pope FM, Solomon E

Abstract

We have characterised a highly polymorphic region 1.3kb downstream of the human Type II collagen gene. It consists of a highly AT-rich tandem repetitive region (minisatellite) approximately 650bp long. Two alleles had been observed previously, differing in size by approximately 300bp. When this region was cloned from four unrelated individuals carrying the larger allele, DNA sequence data identified three alleles, suggesting far higher polymorphism than was originally supposed. This minisatellite was shown to be present in a single copy in the human genome, and to have arisen after the divergence of Old and New World monkeys.

MeSH Terms
Alleles Chromosome Deletion Collagen/genetics Humans Polymorphism, Genetic RNA, Messenger/analysis Repetitive Sequences, Nucleic Acid
Chemicals
RNA, Messenger Collagen
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Stoker N G
Cheah K S
Griffin J R
Pope F M
Solomon E
References (33)
33 references, click to expand
  1. Generation length and rates of hominoid molecular evolution.
    Nature. 1977 Sep 22;269(5626):354-5 PMID: 409955
  2. Exclusion of the alpha 1(II) cartilage collagen gene as the mutant locus in type IA osteogenesis imperfecta.
    J Med Genet. 1985 Jun;22(3):187-91 PMID: 2989526
  3. Highly variable regions of DNA flank the human alpha globin genes.
    Nucleic Acids Res. 1981 Sep 11;9(17):4213-24 PMID: 6272199
  4. Duplication/deletion polymorphism 5' - to the human beta globin gene.
    Nucleic Acids Res. 1981 Oct 10;9(19):5037-47 PMID: 7312624
  5. The highly polymorphic region near the human insulin gene is composed of simple tandemly repeating sequences.
    Nature. 1982 Jan 7;295(5844):31-5 PMID: 7035959
  6. Construction and partial characterization of two recombinant cDNA clones for procollagen from chicken cartilage.
    Nucleic Acids Res. 1982 Feb 25;10(4):1175-92 PMID: 6280134
  7. Isolation and characterization of a human collagen alpha 1(I)-like gene from a cosmid library.
    Nucleic Acids Res. 1982 Mar 25;10(6):1981-94 PMID: 6281728
  8. The construction of cosmid libraries which can be used to transform eukaryotic cells.
    Nucleic Acids Res. 1982 Nov 11;10(21):6715-32 PMID: 6294612
  9. The structure of the human zeta-globin gene and a closely linked, nearly identical pseudogene.
    Cell. 1982 Dec;31(3 Pt 2):553-63 PMID: 6297773
  10. A Hind III restriction site polymorphism in the human collagen alpha 1 (I)-like gene on chromosome No. 7.
    Hum Genet. 1982;62(2):175-6 PMID: 6298096
  11. Complete nucleotide sequences of the T24 human bladder carcinoma oncogene and its normal homologue.
    Nature. 1983 Mar 3;302(5903):33-7 PMID: 6298635
  12. pEMBL: a new family of single stranded plasmids.
    Nucleic Acids Res. 1983 Mar 25;11(6):1645-55 PMID: 6300771
  13. Molecular basis of length polymorphism in the human zeta-globin gene complex.
    Proc Natl Acad Sci U S A. 1983 Aug;80(16):5022-6 PMID: 6308667
  14. Analysis of the 3' end of the human pro-alpha 2(I) collagen gene. Utilization of multiple polyadenylation sites in cultured fibroblasts.
    J Biol Chem. 1983 Aug 25;258(16):10128-35 PMID: 6309769
  15. Multiple 3' ends of the chicken pro alpha 2(I) collagen gene.
    Nucleic Acids Res. 1983 Aug 25;11(16):5443-50 PMID: 6193484
  16. Lethal osteogenesis imperfecta congenita and a 300 base pair gene deletion for an alpha 1(I)-like collagen.
    Br Med J (Clin Res Ed). 1984 Feb 11;288(6415):431-4 PMID: 6419953
  17. Isolation and characterization of genomic clones corresponding to the human type II procollagen gene.
    Nucleic Acids Res. 1984 Jan 25;12(2):1025-38 PMID: 6320112
  18. "A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity". Addendum.
    Anal Biochem. 1984 Feb;137(1):266-7 PMID: 6329026
  19. Structure and sequence of the chicken type II procollagen gene. Characterization of the region encoding the carboxyl-terminal telopeptide and propeptide.
    J Biol Chem. 1984 Jun 25;259(12):7826-34 PMID: 6330084
  20. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  21. A new method for detection of small modifications in genomic DNA, applied to the human delta-beta globin gene cluster.
    Eur J Biochem. 1984 Aug 1;142(3):473-80 PMID: 6088226
  22. Identification of messenger RNA for human type II collagen.
    FEBS Lett. 1984 Sep 3;174(2):238-42 PMID: 6547916
  23. A tandemly reiterated DNA sequence in the long repeat region of herpes simplex virus type 1 found in close proximity to immediate-early mRNA 1.
    J Virol. 1984 Nov;52(2):715-8 PMID: 6092697
  24. Localization of human type II procollagen gene (COL2A1) to chromosome 12.
    Somat Cell Mol Genet. 1984 Nov;10(6):651-5 PMID: 6594770
  25. Unique allelic restriction fragments of the human Ha-ras locus in leukocyte and tumour DNAs of cancer patients.
    Nature. 1985 Jan 31-Feb 6;313(6001):369-74 PMID: 2578622
  26. Hypervariable 'minisatellite' regions in human DNA.
    Nature. 1985 Mar 7-13;314(6006):67-73 PMID: 3856104
  27. Identification and characterization of the human type II collagen gene (COL2A1).
    Proc Natl Acad Sci U S A. 1985 May;82(9):2555-9 PMID: 3857598
  28. Lethal osteogenesis imperfecta and a collagen gene deletion. Length polymorphism provides an alternative explanation.
    Hum Genet. 1985;70(1):35-7 PMID: 3997150
  29. The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3' termini.
    Nucleic Acids Res. 1985 Feb 25;13(4):1347-68 PMID: 2987822
  30. Isolation and partial characterization of the entire human pro alpha 1(II) collagen gene.
    Nucleic Acids Res. 1985 Apr 11;13(7):2207-25 PMID: 2987845
  31. Chromosomal assignments of the genes coding for human types II, III, and IV collagen: a dispersed gene family.
    Proc Natl Acad Sci U S A. 1985 May;82(10):3330-4 PMID: 2987919
  32. The origin and evolution of retroposons.
    Int Rev Cytol. 1985;93:187-279 PMID: 2409043
  33. Rapid and efficient cosmid cloning.
    Nucleic Acids Res. 1981 Jul 10;9(13):2989-98 PMID: 6269067
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1985-07-11
Pages
4613-22
Language
English
Region
England
NLM ID
0411011
PMCID
PMC321815
Subset
IM
Databases
GENBANK
X02670
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com