Home LiteratureArticle Details
PMID: 3881471 Published · ppublish English Journal Article Review

Biochemical identification of new species and biogroups of Enterobacteriaceae isolated from clinical specimens.

Journal of clinical microbiology ·Vol. 21 ·No. 1 ·1985-01-00 ·Pages 46-76

Farmer JJ, Davis BR, Hickman-Brenner FW, McWhorter A, Huntley-Carter GP, Asbury MA, Riddle C, Wathen-Grady HG, Elias C, Fanning GR

Abstract

In 1972 there were only 11 genera and 26 species in the family Enterobacteriaceae. Today there are 22 genera, 69 species, and 29 biogroups or Enteric Groups. This paper is a review of all of the new organisms. It has a series of differential charts to assist in identification and a large chart with the reactions of 98 different organisms for 47 tests often used in identification. A simplified version of this chart gives the most common species and tests most often used for identification. The sources of the new organisms are listed, and their role in human disease is discussed. Fourteen new groups of Enterobacteriaceae are described for the first time. These new groups are biochemically distinct from previously described species, biogroups, and Enteric Groups of Enterobacteriaceae. The new groups are Citrobacter amalonaticus biogroup 1, Klebsiella group 47 (indole positive, ornithine positive), Serratia marcescens biogroup 1, and unclassified Enteric Groups 17, 45, 57, 58, 59, 60, 63, 64, 68, and 69.

MeSH Terms
Adult Aged Citrobacter/classification DNA, Bacterial/genetics Enterobacter/classification Enterobacteriaceae/classification,genetics,metabolism Enterobacteriaceae Infections/microbiology Escherichia/classification Fermentation Humans Infant, Newborn Klebsiella/classification Middle Aged Nucleic Acid Hybridization Proteus/classification Salmonella/classification Serratia/classification Terminology as Topic Yersinia/classification
Chemicals
DNA, Bacterial
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Farmer J J
Davis B R
Hickman-Brenner F W
McWhorter A
Huntley-Carter G P
Asbury M A
Riddle C
Wathen-Grady H G
Elias C
Fanning G R
References (58)
58 references, click to expand
  1. [Rahnella aquatilis, a new member of the Enterobacteriaceae (author's transl)].
    Ann Microbiol (Paris). 1979 Feb-Mar;130(2):163-77 PMID: 484990
  2. Serratia ficaria isolated from a human clinical specimen.
    J Clin Microbiol. 1981 Aug;14(2):234-6 PMID: 7276152
  3. Purification and properties of hamamelosekinase.
    Eur J Biochem. 1980 Jun;107(2):485-9 PMID: 6249593
  4. [Biochemical study of pigmented Enterobacteriaceae].
    Ann Inst Pasteur (Paris). 1962 Jun;102:726-41 PMID: 14463377
  5. Antibiotic susceptibility testing by a standardized single disk method.
    Am J Clin Pathol. 1966 Apr;45(4):493-6 PMID: 5325707
  6. [Citrobacter].
    Ann Inst Pasteur Lille. 1965;16:67-74 PMID: 5869289
  7. A new species of Proteus isolated from larvae of the gypsy moth Porthetria dispar (L.).
    Antonie Van Leeuwenhoek. 1966;32(2):187-91 PMID: 5296847
  8. Significance of Achromobacter nematophilus Poinar and Thomas (Achromobacteraceae: Eubacteriales) in the development of the nematode, DD-136 (Neoaplectana sp. Steinernematidae).
    Parasitology. 1966 May;56(2):385-90 PMID: 4960247
  9. Description of a bacterium associated with redmouth disease of rainbow trout (Salmo gairdneri).
    Can J Microbiol. 1966 Aug;12(4):763-70 PMID: 6007992
  10. Diagnostic value of a Hafnia-specific bacteriophage.
    J Bacteriol. 1968 Aug;96(2):564 PMID: 5674062
  11. Unusual fermentative, gram-negative bacilli isolated from clinical specimens. I. Characterization of Erwinia strains of the "lathyri-herbicola group".
    Appl Microbiol. 1970 Jul;20(1):151-5 PMID: 5456936
  12. Recognition and differential diagnosis of Erwinia herbicola strains isolated in the hospital.
    Pathol Microbiol (Basel). 1971;37(1):84-8 PMID: 4930339
  13. Enzymatic synthesis of D(-)-alpha-aminobenzylpenicillin by Kluyvera citrophila.
    J Antibiot (Tokyo). 1971 May;24(5):321-3 PMID: 5581352
  14. Bacteriologic and epidemiologic characteristics of Enterobacter hafniae and Enterobacter liquefaciens.
    J Infect Dis. 1971 Oct;124(4):379-86 PMID: 4335456
  15. Infections caused by microorganisms of the genus Erwinia.
    Ann Intern Med. 1972 Jan;76(1):9-14 PMID: 5021557
  16. A biotype of Enterobacteriaceae intermediate between Citrobacter and Enterobacter.
    Am J Clin Pathol. 1980 Jan;73(1):114-6 PMID: 7352413
  17. Enteric group 15 (Enterobacteriaceae) associated with pneumonia.
    J Clin Microbiol. 1981 Nov;14(5):596-7 PMID: 7309856
  18. Colonization by or diarrhea due to Kluyvera species.
    J Infect Dis. 1982 Jan;145(1):127 PMID: 7054314
  19. Atypical biogroups of Escherichia coli found in clinical specimens and description of Escherichia hermannii sp. nov.
    J Clin Microbiol. 1982 Apr;15(4):703-13 PMID: 7040466
  20. Identification of Proteus penneri sp. nov., formerly known as Proteus vulgaris indole negative or as Proteus vulgaris biogroup 1.
    J Clin Microbiol. 1982 Jun;15(6):1097-102 PMID: 7050147
  21. Escherichia vulneris: a new species of Enterobacteriaceae associated with human wounds.
    J Clin Microbiol. 1982 Jun;15(6):1133-40 PMID: 7107843
  22. [The taxonomy of Salmonella].
    Ann Microbiol (Paris). 1982 Sep-Oct;133(2):223-43 PMID: 7149524
  23. [A proposal for Salmonella nomenclature].
    Ann Microbiol (Paris). 1982 Sep-Oct;133(2):245-54 PMID: 7149525
  24. Bacteremia due to Cedecea neteri sp. nov.
    J Clin Microbiol. 1982 Oct;16(4):775-8 PMID: 7153331
  25. Ewingella americana gen.nov., sp.nov., a new Enterobacteriaceae isolated from clinical specimens.
    Ann Microbiol (Paris). 1983 Jan-Feb;134A(1):39-52 PMID: 6847036
  26. Cedecea davisae isolated from scrotal abscess.
    J Urol. 1983 Jul;130(1):148-9 PMID: 6864901
  27. Providencia rustigianii: a new species in the family Enterobacteriaceae formerly known as Providencia alcalifaciens biogroup 3.
    J Clin Microbiol. 1983 Jun;17(6):1057-60 PMID: 6874899
  28. Analysis of eight cases of neonatal meningitis and sepsis due to Enterobacter sakazakii.
    J Clin Microbiol. 1983 Jul;18(1):115-20 PMID: 6885983
  29. Polymicrobial bacteremia caused by Ewingella americana (family Enterobacteriaceae) and an unusual Pseudomonas species.
    J Clin Microbiol. 1983 Sep;18(3):727-9 PMID: 6630449
  30. Serratia ficaria isolated from a leg ulcer.
    South Med J. 1983 Dec;76(12):1591-2 PMID: 6648629
  31. Moellerella wisconsensis, a new genus and species of Enterobacteriaceae found in human stool specimens.
    J Clin Microbiol. 1984 Apr;19(4):460-3 PMID: 6715516
  32. A hydrogen sulphide producing Gram-negative rod from water.
    Zentralbl Bakteriol Mikrobiol Hyg A. 1983 Mar;254(1):95-108 PMID: 6675347
  33. Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens.
    J Clin Microbiol. 1985 Jan;21(1):77-81 PMID: 3968204
  34. The genus Erwinia: enterobacteria pathogenic to plants and animals.
    Annu Rev Microbiol. 1972;26:389-426 PMID: 4562815
  35. The nomenclature of Salmonella, its usage, and definitions for the three species.
    Can J Microbiol. 1972 Nov;18(11):1629-37 PMID: 4563851
  36. Aerobic bacteria occurring in the hind-gut of the cockroach, Blatta orientalis.
    J Hyg (Lond). 1973 Mar;71(1):1-7 PMID: 4571611
  37. Volatile compounds produced in sterile fish muscle (Sebastes melanops) by Pseudomonas perolens.
    Appl Microbiol. 1973 Feb;25(2):257-61 PMID: 4694344
  38. The taxonomic position of Obesumbacterium proteus, a common brewery contaminant.
    J Gen Microbiol. 1973 Apr;75(2):295-307 PMID: 4706971
  39. Molecular relationships among the Salmonelleae.
    J Bacteriol. 1973 Jul;115(1):307-15 PMID: 4717519
  40. Identification of bacteria by computer: general aspects and perspectives.
    J Gen Microbiol. 1973 Aug;77(2):273-90 PMID: 4584058
  41. Polynucleotide sequence divergence in the genus Citrobacter.
    J Gen Microbiol. 1974 Aug;83(2):271-82 PMID: 4427101
  42. Erwinia infections in man.
    CRC Crit Rev Clin Lab Sci. 1973 Dec;4(4):341-55 PMID: 4217239
  43. Catabolism of hamamelose. The anaerobic dissimilation of D-hamamelose by Kluyvera citrophila 627.
    Eur J Biochem. 1974 Dec 16;50(1):191-6 PMID: 4452358
  44. Unusual Enterobacteriaceae: H2S+ Shigella sonnei, one authentic and one false positive due to contamination with the obligate anaerobe Eubacterium lentum.
    J Clin Microbiol. 1976 Feb;3(2):206-8 PMID: 767362
  45. DNA relatedness among species of Enterobacter and Serratia.
    Can J Microbiol. 1976 Feb;22(2):121-37 PMID: 1260520
  46. [Taxonomic positions of H2S-Enterobacteria in relation to the genus (Citrobacter) (author's transl)].
    Ann Microbiol (Paris). 1976 Feb-Mar;127A(2):275-95 PMID: 962250
  47. [Study of Enterobacter strains belonging to a particular group related to Enterobacter aerogenes (author's transl)].
    Ann Microbiol (Paris). 1976 May-Jun;127(4):545-8 PMID: 970833
  48. [Taxonomic study of enterobacteria belonging or related to the genus Enterobacter (author's transl)].
    Ann Microbiol (Paris). 1976 Oct;127B(3):317-35 PMID: 1020871
  49. [Taxonomic study of enterobacteria belonging or related to the genus Klebsiella (author's transl)].
    Ann Microbiol (Paris). 1977 Jul;128B(1):45-59 PMID: 334015
  50. Atypical Yersinia enterocolitica: clinical and epidemiological parameters.
    J Clin Microbiol. 1978 Jun;7(6):562-7 PMID: 670380
  51. The genus Serratia.
    Annu Rev Microbiol. 1978;32:221-48 PMID: 360966
  52. [Numerical taxonomic studies on enterobacteria of surface-water (author's transl)].
    Zentralbl Bakteriol B. 1978 Sep;167(3):262-71 PMID: 735569
  53. Salmonella typhi: identification, antibiograms, serology, and bacteriophage typing.
    Am J Med Technol. 1978 Dec;44(12):1149-59 PMID: 736051
  54. Unusual groups of Morganella ("Proteus") morganii isolated from clinical specimens: lysine-positive and ornithine-negative biogroups.
    J Clin Microbiol. 1980 Jul;12(1):88-94 PMID: 6775010
  55. Kluyvera, a new (redefined) genus in the family Enterobacteriaceae: identification of Kluyvera ascorbata sp. nov. and Kluyvera cryocrescens sp. nov. in clinical specimens.
    J Clin Microbiol. 1981 May;13(5):919-33 PMID: 7240403
  56. Tatumella ptyseos gen. nov., sp. nov., a member of the family Enterobacteriaceae found in clinical specimens.
    J Clin Microbiol. 1981 Jul;14(1):79-88 PMID: 7263854
  57. The identification of Enterobacteriaceae from breweries: combined use and comparison of API 20E system, gel electrophoresis of proteins and gas chromatography of volatile metabolites.
    J Appl Bacteriol. 1981 Aug;51(1):51-65 PMID: 7024237
  58. Group F, a new Vibrio?
    Lancet. 1977 Sep 10;2(8037):565-6 PMID: 95779
Article Info
Journal
Journal of clinical microbiology
Abbr.
J Clin Microbiol
ISSN
0095-1137
Published
1985-01-00
Pages
46-76
Language
English
Region
United States
NLM ID
7505564
PMCID
PMC271578
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com