Home LiteratureArticle Details
PMID: 358190 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Processing of the 5' end of Escherichia coli 16S ribosomal RNA.

Dahlberg AE, Dahlberg JE, Lund E, Tokimatsu H, Rabson AB, Calvert PC, Reynolds F, Zahalak M

Abstract

We have isolated and partially characterized an endonuclease involved in processing the 5' end of 16S rRNA of Escherichia coli. A mutant strain that is deficient in this enzyme accumulates a new precursor of 16S rRNA, named 16.3S rRNA. This rRNA has the 3' end of mature 16S rRNA but is about 60 nucleotides longer at the 5' end. In vitro, the enzyme preparation cleaves an RNA fragment of about 60 nucleotides from the 5' end of 16.3S rRNA in 30S ribosomal subunits, yielding the mature 5' end of 16S rRNA. In the mutant strain the 16.3S rRNA is associated with a full complement of 21 ribosomal proteins in 30S subunits. These particles, which comprise 50% of the total 30S subunits, are present on polyribosomes.

MeSH Terms
Escherichia coli/genetics Nucleic Acid Precursors/metabolism RNA, Bacterial/metabolism RNA, Ribosomal/metabolism Ribonucleases/isolation & purification,metabolism Ribosomal Proteins Transcription, Genetic
Chemicals
Nucleic Acid Precursors RNA, Bacterial RNA, Ribosomal Ribosomal Proteins Ribonucleases
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Dahlberg A E
Dahlberg J E
Lund E
Tokimatsu H
Rabson A B
Calvert P C
Reynolds F
Zahalak M
References (33)
33 references, click to expand
  1. Recent progress in the determination of the primary sequence of the 16 S RNA of Escherichia coli.
    FEBS Lett. 1977 Dec 15;84(2):337-41 PMID: 413741
  2. Complementary sequences 1700 nucleotides apart form a ribonuclease III cleavage site in Escherichia coli ribosomal precursor RNA.
    Proc Natl Acad Sci U S A. 1978 Aug;75(8):3593-7 PMID: 358189
  3. Some rRNA operons in E. coli have tRNA genes at their distal ends.
    Cell. 1978 Feb;13(2):335-44 PMID: 342117
  4. Genetics of bacterial ribosomes.
    Annu Rev Genet. 1977;11:297-347 PMID: 339818
  5. Spacer transfer RNAs in ribosomal RNA transcripts of E. coli: processing of 30S ribosomal RNA in vitro.
    Cell. 1977 Jun;11(2):247-62 PMID: 329997
  6. Metabolism of guanosine tetraphosphate in Escherichia coli.
    Eur J Biochem. 1972 Jul 24;28(3):316-26 PMID: 4562599
  7. Processing of the 17-S Escherichia coli precursor RNA in the 27-S pre-ribosomal particle.
    Eur J Biochem. 1976 Jan 15;61(2):433-42 PMID: 765130
  8. Structure and synthesis of the ribosomal ribonucleic acid of prokaryotes.
    Bacteriol Rev. 1973 Dec;37(4):562-603 PMID: 4203396
  9. Enzymatic synthesis of bacteriophage fl DNA: RNA hybrid and double stranded RNA.
    Nat New Biol. 1971 Feb 10;229(6):169-72 PMID: 5280103
  10. Structural differences between the 16S ribosomal RNA of E. coli and its precursor.
    Nat New Biol. 1971 Jul 14;232(28):52-4 PMID: 4935735
  11. Processing of precursor particles containing 17S rRNA in a cell free system.
    FEBS Lett. 1974 Dec 15;49(2):215-9 PMID: 4613577
  12. 30 S pre-ribosomal RNA of Escherichia coli and products of cleavage by ribonuclease III: length and molecular weight.
    J Mol Biol. 1974 Jul 15;86(4):741-7 PMID: 4610145
  13. Ribosomal proteins. 43. In vivo assembly of Escherichia coli ribosomal proteins.
    J Mol Biol. 1973 Mar 15;74(4):587-97 PMID: 4580907
  14. A role for ribonuclease 3 in processing of ribosomal ribonucleic acid and messenger ribonucleic acid precursors in Escherichia coli.
    J Biol Chem. 1973 Nov 25;248(22):7967-9 PMID: 4584343
  15. Synthesis of a large precursor to ribosomal RNA in a mutant of Escherichia coli.
    Proc Natl Acad Sci U S A. 1973 Dec;70(12):3361-5 PMID: 4587249
  16. T7 early RNAs and Escherichia coli ribosomal RNAs are cut from large precursor RNAs in vivo by ribonuclease 3.
    Proc Natl Acad Sci U S A. 1973 Dec;70(12):3296-3300 PMID: 4587248
  17. In vitro assembly of 30S ribosomal particles from precursor 16S RNA of Escherichia coli.
    Nature. 1974 Feb 22;247(5442):552-4 PMID: 4594437
  18. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  19. Structure of a 30 S pre-ribosomal RNA of E. coli.
    FEBS Lett. 1975 Aug 1;56(1):85-91 PMID: 169158
  20. Electrophoretic characterization of bacterial polyribosomes in agarose-acrylamide composite gels.
    J Mol Biol. 1969 Apr 14;41(1):139-47 PMID: 4979520
  21. Transformation of 17 s to 16 s ribosomal RNA using ribonuclease II of Escherichia coli.
    J Mol Biol. 1971 Sep 14;60(2):325-38 PMID: 4938733
  22. Tentative identification of a "maturation enzyme" for precursor 16 s ribosomal RNA in Escherichia coli.
    J Mol Biol. 1971 Dec 14;62(2):321-9 PMID: 4944931
  23. Molecular weight estimation and separation of ribonucleic acid by electrophoresis in agarose-acrylamide composite gels.
    Biochemistry. 1968 Feb;7(2):668-74 PMID: 4868544
  24. Specific hybridization of tyrosine transfer ribonucleic acids with DNA from a transducing bacteriophage phi-80 carrying the amber suppressor gene su 3.
    J Mol Biol. 1967 Nov 14;29(3):457-71 PMID: 4867493
  25. A two-dimensional fractionation procedure for radioactive nucleotides.
    J Mol Biol. 1965 Sep;13(2):373-98 PMID: 5325727
  26. Phosphorylation of nucleic acid by an enzyme from T4 bacteriophage-infected Escherichia coli.
    Proc Natl Acad Sci U S A. 1965 Jul;54(1):158-65 PMID: 5323016
  27. Transfer RNA genes between 16S and 23S rRNA genes in rRNA transcription units of E. coli.
    Cell. 1976 Feb;7(2):165-77 PMID: 782716
  28. The 30 S ribosomal precursor RNA from Escherichia coli. A primary transcript containing 23 S, 16 S, and 5 S sequences.
    J Biol Chem. 1975 Jul 25;250(14):5647-54 PMID: 1095585
  29. Studies of 16 and 23 S ribosomal RNA of Escherichia coli using composite gel electrophoresis.
    J Mol Biol. 1971 Jan 14;55(1):61-74 PMID: 5552699
  30. Evidence for reduced breakdown of messenger RNA during blocked transcription or translation in Escherichia coli.
    J Mol Biol. 1969 Aug 14;43(3):593-606 PMID: 5401236
  31. The reliability of molecular weight determinations by dodecyl sulfate-polyacrylamide gel electrophoresis.
    J Biol Chem. 1969 Aug 25;244(16):4406-12 PMID: 5806584
  32. Nucleotide sequence from the coat protein cistron of R17 bacteriophage RNA.
    Nature. 1969 Sep 6;223(5210):1009-14 PMID: 5811898
  33. Ribosomal assembly defective mutants of Escherichia coli.
    Nucleic Acids Res. 1974 Jan;1(1):149-69 PMID: 10793668
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1978-08-00
Pages
3598-602
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC392832
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com