Home LiteratureArticle Details
PMID: 3072199 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

DNA-dependent RNA polymerase of Escherichia coli induces bending or an increased flexibility of DNA by specific complex formation.

The EMBO journal ·Vol. 7 ·No. 13 ·1988-12-20 ·Pages 4379-81

Heumann H, Ricchetti M, Werel W

Abstract

Escherichia coli RNA polymerase is shown to induce bending or an increased flexibility of the promoter DNA. This is a specific effect of holoenzyme (core enzyme and sigma-factor). The centre of the flexibility is 3 bp upstream of the initiation point of RNA synthesis. This flexibility or bending is maintained during RNA synthesis by core enzyme.

MeSH Terms
DNA, Bacterial/genetics,metabolism DNA-Directed RNA Polymerases/metabolism Escherichia coli/genetics,metabolism Genes, Bacterial Nucleic Acid Conformation Promoter Regions, Genetic Transcription, Genetic
Chemicals
DNA, Bacterial DNA-Directed RNA Polymerases
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Heumann H
Max-Planck-Institut für Biochemie, Martinsried, FRG.
Ricchetti M
Werel W
References (26)
26 references, click to expand
  1. A new method of large scale preparation of highly purified DNA-dependent RNA-polymerase from E. coli.
    Hoppe Seylers Z Physiol Chem. 1970 Feb;351(2):221-4 PMID: 4907251
  2. Topography of interaction of Escherichia coli RNA polymerase subunits with lac UV5 promoter.
    FEBS Lett. 1981 Jun 1;128(1):46-50 PMID: 7023981
  3. Reconstitution of bacterial DNA-dependent RNA-polymerase from isolated subunits as a tool for the elucidation of the role of the subunits in transcription.
    FEBS Lett. 1970 Dec;11(3):165-168 PMID: 11945477
  4. Sequence periodicities in chicken nucleosome core DNA.
    J Mol Biol. 1986 Oct 20;191(4):659-75 PMID: 3806678
  5. Structure of the DNA-Eco RI endonuclease recognition complex at 3 A resolution.
    Science. 1986 Dec 19;234(4783):1526-41 PMID: 3024321
  6. Structure of the repressor-operator complex of bacteriophage 434.
    Nature. 1987 Apr 30-May 6;326(6116):846-52 PMID: 3553959
  7. A simple procedure for resolution of Escherichia coli RNA polymerase holoenzyme from core polymerase.
    Arch Biochem Biophys. 1977 Aug;182(2):404-8 PMID: 332084
  8. A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system.
    Nucleic Acids Res. 1981 Jul 10;9(13):3047-60 PMID: 6269071
  9. Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base.
    J Mol Biol. 1987 Jul 5;196(1):85-100 PMID: 3309350
  10. Intermediates in transcription initiation from the E. coli lac UV5 promoter.
    Cell. 1985 Dec;43(2 Pt 1):449-59 PMID: 2416465
  11. Overexpression and purification of the sigma subunit of Escherichia coli RNA polymerase.
    Gene. 1983 Dec;26(2-3):109-18 PMID: 6231214
  12. DNA twisting and the affinity of bacteriophage 434 operator for bacteriophage 434 repressor.
    Proc Natl Acad Sci U S A. 1988 Jul;85(13):4633-7 PMID: 3387430
  13. Unusual properties of promoter-up mutations in the Escherichia coli galactose operon and evidence suggesting RNA polymerase-induced DNA bending.
    EMBO J. 1987 Feb;6(2):507-13 PMID: 3034593
  14. Mobility of DNA in gel electrophoresis.
    Biopolymers. 1982 Nov;21(11):2315-6 PMID: 7171739
  15. Structure of the nucleosome core particle at 7 A resolution.
    Nature. 1984 Oct 11-17;311(5986):532-7 PMID: 6482966
  16. The DNA binding domain and bending angle of E. coli CAP protein.
    Cell. 1986 Dec 26;47(6):995-1005 PMID: 3536129
  17. One-dimensional diffusion of Escherichia coli DNA-dependent RNA polymerase: a mechanism to facilitate promoter location.
    Proc Natl Acad Sci U S A. 1988 Jul;85(13):4610-4 PMID: 3290898
  18. A steady state assay for the RNA polymerase initiation reaction.
    J Biol Chem. 1978 Dec 25;253(24):8941-8 PMID: 363712
  19. DNA bending and its relation to nucleosome positioning.
    J Mol Biol. 1985 Dec 20;186(4):773-90 PMID: 3912515
  20. Large-scale preparation of a DNA fragment containing the strong promoter A1 of the phage T7.
    Biochim Biophys Acta. 1987 Jul 14;909(2):126-32 PMID: 2439122
  21. Spatial arrangement of DNA-dependent RNA polymerase of Escherichia coli and DNA in the specific complex. A neutron small angle scattering study.
    J Mol Biol. 1988 May 5;201(1):115-25 PMID: 3047395
  22. DNA bend direction by phase sensitive detection.
    Nature. 1987 Jul 9-15;328(6126):178-81 PMID: 3600796
  23. Direct evidence for DNA bending at the lambda replication origin.
    Science. 1987 Apr 24;236(4800):416-22 PMID: 2951850
  24. The locus of sequence-directed and protein-induced DNA bending.
    Nature. 1984 Apr 5-11;308(5959):509-13 PMID: 6323997
  25. Visualization of intermediary transcription states in the complex between Escherichia coli DNA-dependent RNA polymerases and a promoter-carrying DNA fragment using the gel retardation method.
    Eur J Biochem. 1986 Aug 1;158(3):575-9 PMID: 3525164
  26. Why does the electrophoretic mobility of DNA in gels vary with the length of the molecule?
    Biopolymers. 1982 May;21(5):995-7 PMID: 7082773
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1988-12-20
Pages
4379-81
Language
English
Region
England
NLM ID
8208664
PMCID
PMC455170
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com