Home LiteratureArticle Details
PMID: 2974924 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Step-arrest mutants of FLP recombinase: implications for the catalytic mechanism of DNA recombination.

Molecular and cellular biology ·Vol. 8 ·No. 8 ·1988-08-00 ·Pages 3303-10

Parsons RL, Prasad PV, Harshey RM, Jayaram M

Abstract

The site-specific recombinase (FLP) encoded by the yeast plasmid 2 micron circle belongs to the integrase (of phage lambda) family of recombinases. The sparse homology within the members of this family contrasts with the invariance of three residues, His-396, Arg-399, and Tyr-433 (the numbers correspond to the family alignment positions), among them. We report here results on substrate recognition and catalysis by FLP proteins altered at these residues. Mutations of the conserved His and Tyr that aborted the reaction at specific steps of catalysis permitted genetic dissection of the possible biochemical steps of recombination. We provide indirect evidence that recombination by FLP proceeds through a Holliday junction intermediate.

MeSH Terms
Bacterial Outer Membrane Proteins/genetics,metabolism Bacteriophage lambda/genetics Base Sequence DNA Nucleotidyltransferases/genetics,metabolism Escherichia coli/genetics Molecular Sequence Data Mutation Plasmids Promoter Regions, Genetic Recombination, Genetic Substrate Specificity
Chemicals
Bacterial Outer Membrane Proteins DNA Nucleotidyltransferases FLP recombinase
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Parsons R L
Department of Molecular Biology, Research Institute of Scripps Clinic, La Jolla, California 92037.
Prasad P V
Harshey R M
Jayaram M
References (21)
21 references, click to expand
  1. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  2. Nucleotide sequence of the yeast plasmid.
    Nature. 1980 Aug 28;286(5776):860-5 PMID: 6251374
  3. CAP and RNA polymerase interactions with the lac promoter: binding stoichiometry and long range effects.
    Nucleic Acids Res. 1983 Jan 11;11(1):141-58 PMID: 6306561
  4. Efficient site-directed mutagenesis by simultaneous use of two primers.
    Nucleic Acids Res. 1983 Aug 11;11(15):5103-12 PMID: 6308572
  5. Resolution of synthetic att-site Holliday structures by the integrase protein of bacteriophage lambda.
    Nature. 1984 Oct 25-31;311(5988):721-6 PMID: 6092961
  6. Mechanism of strand cleavage and exchange in the Cre-lox site-specific recombination system.
    J Mol Biol. 1985 Feb 5;181(3):351-62 PMID: 3856690
  7. The FLP recombinase of the 2 micron circle DNA of yeast: interaction with its target sequences.
    Cell. 1985 Apr;40(4):795-803 PMID: 3879971
  8. Two-micrometer circle site-specific recombination: the minimal substrate and the possible role of flanking sequences.
    Proc Natl Acad Sci U S A. 1985 Sep;82(17):5875-9 PMID: 3898075
  9. The FLP recombinase of the yeast 2-micron plasmid: characterization of its recombination site.
    Proc Natl Acad Sci U S A. 1985 Nov;82(21):7270-4 PMID: 2997780
  10. The integrase family of site-specific recombinases: regional similarities and global diversity.
    EMBO J. 1986 Feb;5(2):433-40 PMID: 3011407
  11. The FLP recombinase of the Saccharomyces cerevisiae 2 microns plasmid attaches covalently to DNA via a phosphotyrosyl linkage.
    Mol Cell Biol. 1985 Nov;5(11):3274-9 PMID: 2427927
  12. Mechanistic aspects of DNA topoisomerases.
    Adv Protein Chem. 1986;38:69-107 PMID: 3026152
  13. Mutations in the 2-microns circle site-specific recombinase that abolish recombination without affecting substrate recognition.
    Proc Natl Acad Sci U S A. 1987 Apr;84(8):2189-93 PMID: 3104911
  14. Role of homology in site-specific recombination of bacteriophage lambda: evidence against joining of cohesive ends.
    Proc Natl Acad Sci U S A. 1987 Jun;84(12):4049-53 PMID: 2954163
  15. Isolation of intermediates in the binding of the FLP recombinase of the yeast plasmid 2-micron circle to its target sequence.
    J Mol Biol. 1987 Jan 20;193(2):345-58 PMID: 3037086
  16. Site-specific recombination intermediates trapped with suicide substrates.
    Cell. 1987 Aug 28;50(5):779-88 PMID: 3040260
  17. Homology-dependent interactions in phage lambda site-specific recombination.
    Nature. 1987 Sep 24-30;329(6137):346-8 PMID: 2957599
  18. Isolation and characterization of intermediates in site-specific recombination.
    Proc Natl Acad Sci U S A. 1987 Oct;84(19):6840-4 PMID: 2821547
  19. Occurrence of crossed strand-exchange forms in yeast DNA during meiosis.
    Proc Natl Acad Sci U S A. 1979 Jul;76(7):3445-9 PMID: 386340
  20. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  21. Structure and function of the phage lambda att site: size, int-binding sites, and location of the crossover point.
    Cold Spring Harb Symp Quant Biol. 1981;45 Pt 1:429-37 PMID: 6457725
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1988-08-00
Pages
3303-10
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC363564
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com