Home LiteratureArticle Details
PMID: 2594760 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Detection of specific DNA sequences by fluorescence amplification: a color complementation assay.

Chehab FF, Kan YW

Abstract

We have developed a color complementation assay that allows rapid screening of specific genomic DNA sequences. It is based on the simultaneous amplification of two or more DNA segments with fluorescent oligonucleotide primers such that the generation of a color, or combination of colors, can be visualized and used for diagnosis. Color complementation assay obviates the need for gel electrophoresis and has been applied to the detection of a large and small gene deletion, a chromosomal translocation, an infectious agent, and a single-base substitution. DNA amplification with fluorescent oligonucleotide primers has also been used to multiplex and discriminate five different amplified DNA loci simultaneously. Each primer set is conjugated to a different dye, and the fluorescence of each dye respective to its amplified DNA locus is scored on a fluorometer. This method is valuable for DNA diagnostics of genetic, acquired, and infectious diseases, as well as in DNA forensics. It also lends itself to complete automation.

MeSH Terms
Base Sequence Chromosome Deletion DNA/blood,genetics,isolation & purification DNA, Viral/genetics Female Genetic Complementation Test Globins/genetics Humans Hydrops Fetalis/blood,genetics Leukocytes/analysis Molecular Sequence Data Nucleic Acid Amplification Techniques Oligonucleotide Probes Pregnancy Spectrometry, Fluorescence/methods
Chemicals
DNA, Viral Oligonucleotide Probes Globins DNA
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Chehab F F
Applied Biosystems, Research and Development, Foster City, CA 94404.
Kan Y W
References (35)
35 references, click to expand
  1. Polymorphism of DNA sequence adjacent to human beta-globin structural gene: relationship to sickle mutation.
    Proc Natl Acad Sci U S A. 1978 Nov;75(11):5631-5 PMID: 281713
  2. Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes.
    Proc Natl Acad Sci U S A. 1989 Aug;86(16):6230-4 PMID: 2762325
  3. Base substitution in an intervening sequence of a beta+-thalassemic human globin gene.
    Proc Natl Acad Sci U S A. 1981 Apr;78(4):2455-9 PMID: 6264477
  4. DNA analysis in the diagnosis of hemoglobin disorders.
    Methods Enzymol. 1981;76:805-17 PMID: 6276651
  5. Linkage of beta-thalassaemia mutations and beta-globin gene polymorphisms with DNA polymorphisms in human beta-globin gene cluster.
    Nature. 1982 Apr 15;296(5858):627-31 PMID: 6280057
  6. Detection of sickle cell beta S-globin allele by hybridization with synthetic oligonucleotides.
    Proc Natl Acad Sci U S A. 1983 Jan;80(1):278-82 PMID: 6572002
  7. Specific transcription and RNA splicing defects in five cloned beta-thalassaemia genes.
    Nature. 1983 Apr 14;302(5909):591-6 PMID: 6188062
  8. Prenatal diagnosis of beta-thalassemia. Detection of a single nucleotide mutation in DNA.
    N Engl J Med. 1983 Aug 4;309(5):284-7 PMID: 6866053
  9. A polymorphic DNA marker genetically linked to Huntington's disease.
    Nature. 1983 Nov 17-23;306(5940):234-8 PMID: 6316146
  10. Detection of single base substitutions in total genomic DNA.
    Nature. 1985 Feb 7-13;313(6002):495-8 PMID: 3969155
  11. Prenatal diagnosis of classic phenylketonuria by DNA analysis.
    Lancet. 1985 Mar 9;1(8428):549-51 PMID: 2857902
  12. Prenatal diagnosis and carrier detection of Duchenne muscular dystrophy with closely linked RFLPs.
    Lancet. 1985 Mar 23;1(8430):655-8 PMID: 2858615
  13. Genetic mapping and diagnosis of haemophilia A achieved through a BclI polymorphism in the factor VIII gene.
    Nature. 1985 Apr 25-May 1;314(6013):738-40 PMID: 2986011
  14. Detection of B-cell lymphoma in peripheral blood by DNA hybridisation.
    Lancet. 1985 Nov 16;2(8464):1092-5 PMID: 2865569
  15. Detection of single base substitutions by ribonuclease cleavage at mismatches in RNA:DNA duplexes.
    Science. 1985 Dec 13;230(4731):1242-6 PMID: 4071043
  16. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.
    Science. 1985 Dec 20;230(4732):1350-4 PMID: 2999980
  17. Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes.
    Nature. 1986 Nov 13-19;324(6093):163-6 PMID: 3785382
  18. Indirect cystic fibrosis carrier detection.
    Lancet. 1987 Jul 18;2(8551):156-7 PMID: 2885615
  19. Detection of minimal residual cells carrying the t(14;18) by DNA sequence amplification.
    Science. 1987 Jul 10;237(4811):175-8 PMID: 3110950
  20. Detection of sickle cell anaemia and thalassaemias.
    Nature. 1987 Sep 24-30;329(6137):293-4 PMID: 3627274
  21. An improved method for prenatal diagnosis of genetic diseases by analysis of amplified DNA sequences. Application to hemophilia A.
    N Engl J Med. 1987 Oct 15;317(16):985-90 PMID: 3657865
  22. Detection of human papilloma virus in paraffin-embedded tissue using the polymerase chain reaction.
    J Exp Med. 1988 Jan 1;167(1):225-30 PMID: 2826637
  23. Molecular basis of beta thalassemia in south China. Strategy for DNA analysis.
    Hum Genet. 1988 Jan;78(1):37-40 PMID: 3338793
  24. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction.
    Methods Enzymol. 1987;155:335-50 PMID: 3431465
  25. Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations.
    Proc Natl Acad Sci U S A. 1988 Jun;85(12):4397-401 PMID: 3260032
  26. Thermostable DNA polymerase chain amplification of t(14;18) chromosome breakpoints and detection of minimal residual disease.
    Proc Natl Acad Sci U S A. 1988 Jul;85(13):4869-73 PMID: 3133663
  27. Diagnosis of sickle cell anemia and beta-thalassemia with enzymatically amplified DNA and nonradioactive allele-specific oligonucleotide probes.
    N Engl J Med. 1988 Sep 1;319(9):537-41 PMID: 3405266
  28. Allelic sequence variation of the HLA-DQ loci: relationship to serology and to insulin-dependent diabetes susceptibility.
    Proc Natl Acad Sci U S A. 1988 Aug;85(16):6012-6 PMID: 2842756
  29. Molecular basis and prenatal diagnosis of beta-thalassemia.
    Blood. 1988 Oct;72(4):1107-16 PMID: 3048433
  30. Electron transfer in a genetically modified bacterial reaction center containing a heterodimer.
    Proc Natl Acad Sci U S A. 1988 Oct;85(20):7562-6 PMID: 3051000
  31. DNA sequencing with Thermus aquaticus DNA polymerase and direct sequencing of polymerase chain reaction-amplified DNA.
    Proc Natl Acad Sci U S A. 1988 Dec;85(24):9436-40 PMID: 3200828
  32. Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification.
    Nucleic Acids Res. 1988 Dec 9;16(23):11141-56 PMID: 3205741
  33. Detection of cytomegalovirus infection in paraffin-embedded tissue specimens with the polymerase chain reaction.
    Mod Pathol. 1989 Mar;2(2):75-8 PMID: 2542930
  34. The ligation amplification reaction (LAR)--amplification of specific DNA sequences using sequential rounds of template-dependent ligation.
    Genomics. 1989 May;4(4):560-9 PMID: 2744765
  35. Gene deletions in alpha thalassemia prove that the 5' zeta locus is functional.
    Proc Natl Acad Sci U S A. 1980 Jun;77(6):3586-9 PMID: 6158051
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1989-12-00
Pages
9178-82
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC298457
Subset
IM
Grants
NIDDK NIH HHS · DK16666 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com