Home LiteratureArticle Details
PMID: 25470042 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

TRIM37 is a new histone H2A ubiquitin ligase and breast cancer oncoprotein.

Nature ·Vol. 516 ·No. 7529 ·2014-12-04 ·Pages 116-20

Bhatnagar S, Gazin C, Chamberlain L, Ou J, Zhu X, Tushir JS, Virbasius CM, Lin L, Zhu LJ, Wajapeyee N, Green MR

Abstract

The TRIM37 (also known as MUL) gene is located in the 17q23 chromosomal region, which is amplified in up to ∼ 40% of breast cancers. TRIM37 contains a RING finger domain, a hallmark of E3 ubiquitin ligases, but its protein substrate(s) is unknown. Here we report that TRIM37 mono-ubiquitinates histone H2A, a chromatin modification associated with transcriptional repression. We find that in human breast cancer cell lines containing amplified 17q23, TRIM37 is upregulated and, reciprocally, the major H2A ubiquitin ligase RNF2 (also known as RING1B) is downregulated. Genome-wide chromatin immunoprecipitation (ChIP)-chip experiments in 17q23-amplified breast cancer cells identified many genes, including multiple tumour suppressors, whose promoters were bound by TRIM37 and enriched for ubiquitinated H2A. However, unlike RNF2, which is a subunit of polycomb repressive complex 1 (PRC1), we find that TRIM37 associates with polycomb repressive complex 2 (PRC2). TRIM37, PRC2 and PRC1 are co-bound to specific target genes, resulting in their transcriptional silencing. RNA-interference-mediated knockdown of TRIM37 results in loss of ubiquitinated H2A, dissociation of PRC1 and PRC2 from target promoters, and transcriptional reactivation of silenced genes. Knockdown of TRIM37 in human breast cancer cells containing amplified 17q23 substantially decreases tumour growth in mouse xenografts. Conversely, ectopic expression of TRIM37 renders non-transformed cells tumorigenic. Collectively, our results reveal TRIM37 as an oncogenic H2A ubiquitin ligase that is overexpressed in a subset of breast cancers and promotes transformation by facilitating silencing of tumour suppressors and other genes.

MeSH Terms
Animals Breast Neoplasms/enzymology,genetics Female Gene Expression Profiling Gene Expression Regulation, Neoplastic Gene Knockdown Techniques Gene Silencing Heterografts Histones/metabolism Humans MCF-7 Cells Mice NIH 3T3 Cells Nuclear Proteins/genetics,metabolism Oncogene Proteins/genetics,metabolism Polycomb Repressive Complex 1/genetics,metabolism Tripartite Motif Proteins Ubiquitin-Protein Ligases
Chemicals
Histones Nuclear Proteins Oncogene Proteins Tripartite Motif Proteins Polycomb Repressive Complex 1 RNF2 protein, human TRIM37 protein, human Ubiquitin-Protein Ligases
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Bhatnagar Sanchita
1] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA [2] Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Gazin Claude
CEA/DSV/iRCM/LEFG, Genopole G2, and Université Paris Diderot, 91057 Evry, France.
Chamberlain Lynn
1] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA [2] Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Ou Jianhong
Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Zhu Xiaochun
1] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA [2] Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Tushir Jogender S
Boehringer Ingelheim Pharmaceuticals, Inc., Ridgefield, Connecticut 06877, USA.
Virbasius Ching-Man
1] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA [2] Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Lin Ling
1] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA [2] Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Zhu Lihua J
1] Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA [2] Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Wajapeyee Narendra
Department of Pathology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Green Michael R
1] Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA [2] Programs in Gene Function and Expression and Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
References (40)
40 references, click to expand
  1. Histone ubiquitination: triggering gene activity.
    Mol Cell. 2008 Mar 28;29(6):653-63 PMID: 18374642
  2. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.
    Mol Cell. 2008 Jun 20;30(6):755-66 PMID: 18514006
  3. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.
    PLoS Genet. 2008 Oct;4(10):e1000242 PMID: 18974828
  4. Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.
    BMC Bioinformatics. 2010;11:194 PMID: 20398407
  5. Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination.
    Mol Cell. 2010 May 14;38(3):452-64 PMID: 20471950
  6. ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.
    BMC Bioinformatics. 2010;11:237 PMID: 20459804
  7. EZH2-mediated epigenetic silencing in germinal center B cells contributes to proliferation and lymphomagenesis.
    Blood. 2010 Dec 9;116(24):5247-55 PMID: 20736451
  8. Transcriptional activation of polycomb-repressed genes by ZRF1.
    Nature. 2010 Dec 23;468(7327):1124-8 PMID: 21179169
  9. The Polycomb complex PRC2 and its mark in life.
    Nature. 2011 Jan 20;469(7330):343-9 PMID: 21248841
  10. Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge.
    Genes Dev. 2011 Oct 15;25(20):2210-21 PMID: 22012622
  11. Comparison of lists of genes based on functional profiles.
    BMC Bioinformatics. 2011;12:401 PMID: 21999355
  12. The role of EZH2 in tumour progression.
    Br J Cancer. 2012 Jan 17;106(2):243-7 PMID: 22187039
  13. RINGs hold the key to ubiquitin transfer.
    Trends Biochem Sci. 2012 Feb;37(2):58-65 PMID: 22154517
  14. Comprehensive molecular portraits of human breast tumours.
    Nature. 2012 Oct 4;490(7418):61-70 PMID: 23000897
  15. CpG island structure and trithorax/polycomb chromatin domains in human cells.
    Genomics. 2012 Nov;100(5):320-6 PMID: 22819920
  16. Memories from the polycomb group proteins.
    Annu Rev Genet. 2012;46:561-89 PMID: 22994356
  17. Non-canonical TAF complexes regulate active promoters in human embryonic stem cells.
    Elife. 2012;1:e00068 PMID: 23150797
  18. Inflammatory breast cancer (IBC): clues for targeted therapies.
    Breast Cancer Res Treat. 2013 Jul;140(1):23-33 PMID: 23784380
  19. Multifaceted role of EZH2 in breast and prostate tumorigenesis: epigenetics and beyond.
    Epigenetics. 2013 May;8(5):464-76 PMID: 23644490
  20. Gene silencing triggers polycomb repressive complex 2 recruitment to CpG islands genome wide.
    Mol Cell. 2014 Aug 7;55(3):347-60 PMID: 24999238
  21. BASC, a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures.
    Genes Dev. 2000 Apr 15;14(8):927-39 PMID: 10783165
  22. Expression and purification of recombinant histones and nucleosome reconstitution.
    Methods Mol Biol. 1999;119:1-16 PMID: 10804500
  23. Ras activation in human breast cancer.
    Breast Cancer Res Treat. 2000 Jul;62(1):51-62 PMID: 10989985
  24. Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer.
    Proc Natl Acad Sci U S A. 2001 May 8;98(10):5711-6 PMID: 11331760
  25. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
    Nucleic Acids Res. 2002 Jan 1;30(1):207-10 PMID: 11752295
  26. The 17q23 amplicon and breast cancer.
    Breast Cancer Res Treat. 2003 Apr;78(3):313-22 PMID: 12755490
  27. Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27.
    Genes Dev. 2004 Jul 1;18(13):1592-605 PMID: 15231737
  28. Bioconductor: open software development for computational biology and bioinformatics.
    Genome Biol. 2004;5(10):R80 PMID: 15461798
  29. Role of histone H2A ubiquitination in Polycomb silencing.
    Nature. 2004 Oct 14;431(7010):873-8 PMID: 15386022
  30. Transcription activation by the adenovirus E1a protein.
    Nature. 1989 Mar 2;338(6210):39-44 PMID: 2521923
  31. Homogeneous reconstituted oligonucleosomes, evidence for salt-dependent folding in the absence of histone H1.
    Biochemistry. 1989 Nov 14;28(23):9129-36 PMID: 2605246
  32. A specific member of the ATF transcription factor family can mediate transcription activation by the adenovirus E1a protein.
    Cell. 1990 Jun 29;61(7):1217-24 PMID: 2142019
  33. Xenograft model of progressive human proliferative breast disease.
    J Natl Cancer Inst. 1993 Nov 3;85(21):1725-32 PMID: 8411256
  34. MCF10AT: a model for the evolution of cancer from proliferative breast disease.
    Am J Pathol. 1996 Jan;148(1):313-9 PMID: 8546221
  35. Small-scale density gradient sedimentation to separate and analyze multiprotein complexes.
    Methods. 1997 Jul;12(3):224-34 PMID: 9237167
  36. Polycomb group proteins Ring1A/B link ubiquitylation of histone H2A to heritable gene silencing and X inactivation.
    Dev Cell. 2004 Nov;7(5):663-76 PMID: 15525528
  37. Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing.
    Mol Cell. 2005 Dec 22;20(6):845-54 PMID: 16359901
  38. Structure and E3-ligase activity of the Ring-Ring complex of polycomb proteins Bmi1 and Ring1b.
    EMBO J. 2006 Jun 7;25(11):2465-74 PMID: 16710298
  39. Transformation of different human breast epithelial cell types leads to distinct tumor phenotypes.
    Cancer Cell. 2007 Aug;12(2):160-70 PMID: 17692807
  40. An elaborate pathway required for Ras-mediated epigenetic silencing.
    Nature. 2007 Oct 25;449(7165):1073-7 PMID: 17960246
Article Info
Journal
Nature
Abbr.
Nature
ISSN
1476-4687
Published
2014-12-04
Epub
2014-00-24
Pages
116-20
Language
English
Region
England
NLM ID
0410462
PMCID
PMC4269325
Subset
IM
Grants
Howard Hughes Medical Institute · United States
NIGMS NIH HHS · R01 GM033977 · United States
NIGMS NIH HHS · R01GM033977 · United States
Databases
GEO
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com