Home LiteratureArticle Details
PMID: 2531369 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Maize U2 snRNAs: gene sequence and expression.

Nucleic acids research ·Vol. 17 ·No. 22 ·1989-11-25 ·Pages 8991-9001

Brown JW, Waugh R

Abstract

The complexity of plant U-type small nuclear ribonucleoprotein particles (UsnRNPs) may represent one level at which differences in splicing between animals and plants and between monocotyledonous and dicotyledonous plants could be effected. The maize (monocot.) U2snRNA multigene family consists of some 25 to 40 genes which from RNA blot and RNase protection analyses produce U2snRNAs varying in both size and sequence. The first 77 nucleotides of the maize U2-27 snRNA gene are identical to U2snRNA genes of Arabidopsis (dicot). Despite much lower sequence homology in the remaining 120 nucleotides the secondary structure of the RNA is conserved. The difference in splicing between monocot. and dicot. plants cannot be explained on the basis of sequence differences between monocot, and dicot. U2snRNAs in the region which may interact with intron branch point sequences.

MeSH Terms
Base Sequence Cloning, Molecular Gene Expression Genes Molecular Sequence Data Nucleic Acid Conformation Plants/genetics RNA Splicing RNA, Small Nuclear/genetics Restriction Mapping Ribonucleoproteins/genetics Ribonucleoproteins, Small Nuclear Transcription, Genetic Zea mays/genetics
Chemicals
RNA, Small Nuclear Ribonucleoproteins Ribonucleoproteins, Small Nuclear
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Brown J W
Department of Biological Sciences, University of Dundee, UK.
Waugh R
References (42)
42 references, click to expand
  1. Structure and expression of the U5 snRNA gene of Arabidopsis thaliana. Conserved upstream sequence elements in plant U-RNA genes.
    Nucleic Acids Res. 1988 Nov 25;16(22):10425-40 PMID: 3205713
  2. Are snRNPs involved in splicing?
    Nature. 1980 Jan 10;283(5743):220-4 PMID: 7350545
  3. Normal and mutant human beta-globin pre-mRNAs are faithfully and efficiently spliced in vitro.
    Cell. 1984 Apr;36(4):993-1005 PMID: 6323033
  4. Compilation of small RNA sequences.
    Nucleic Acids Res. 1988;16 Suppl:r71-85 PMID: 2453028
  5. Intron splicing: a conserved internal signal in introns of Drosophila pre-mRNAs.
    Nucleic Acids Res. 1985 Jul 11;13(13):4971-81 PMID: 2410858
  6. Formation of the 3' end of U1 snRNA requires compatible snRNA promoter elements.
    Cell. 1986 Oct 24;47(2):249-58 PMID: 3768956
  7. U1, U2 and U5 small nuclear RNAs are found in plants cells. Complete nucleotide sequence of the U5 RNA family from pea nuclei.
    Nucleic Acids Res. 1983 Dec 20;11(24):8583-94 PMID: 6200829
  8. A U1 snRNA:pre-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5' cleavage site.
    EMBO J. 1988 Aug;7(8):2533-8 PMID: 3056718
  9. Improved method for the isolation of RNA from plant tissues.
    Anal Biochem. 1987 May 15;163(1):16-20 PMID: 2441623
  10. Splicing of in vitro synthesized messenger RNA precursors in HeLa cell extracts.
    Cell. 1983 Nov;35(1):89-99 PMID: 6194902
  11. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA.
    Cell. 1987 Apr 24;49(2):229-39 PMID: 3552247
  12. A compensatory base change in U1 snRNA suppresses a 5' splice site mutation.
    Cell. 1986 Sep 12;46(6):827-35 PMID: 3757028
  13. Introns increase transcriptional efficiency in transgenic mice.
    Proc Natl Acad Sci U S A. 1988 Feb;85(3):836-40 PMID: 3422466
  14. High level of complexity of small nuclear RNAs in fungi and plants.
    J Mol Biol. 1987 Jul 20;196(2):355-61 PMID: 2958638
  15. Stepwise assembly of a pre-mRNA splicing complex requires U-snRNPs and specific intron sequences.
    Cell. 1985 Aug;42(1):355-67 PMID: 3160483
  16. Cofactor requirements of splicing of purified messenger RNA precursors.
    Nature. 1984 Mar 22-28;308(5957):375-7 PMID: 6709044
  17. Plant small nuclear RNAs. Nucleolar U3 snRNA is present in plants: partial characterization.
    Eur J Biochem. 1985 Oct 15;152(2):259-66 PMID: 4054108
  18. Nucleotide sequences of two soybean U1 snRNA genes.
    Nucleic Acids Res. 1988 May 11;16(9):4176 PMID: 3375086
  19. In vitro processing of a plant pre-mRNA in a HeLa cell nuclear extract.
    Nucleic Acids Res. 1986 Oct 10;14(19):7513-28 PMID: 3640337
  20. Structure of U2 snRNA genes of Arabidopsis thaliana and their expression in electroporated plant protoplasts.
    EMBO J. 1988 Mar;7(3):791-9 PMID: 16453831
  21. Molecular analysis of dicot and monocot small nuclear RNA populations.
    Plant Cell. 1989 Jun;1(6):633-43 PMID: 2535515
  22. Nucleotide sequence of a bean (Phaseolus vulgaris) U1 small nuclear RNA gene: implications for plant pre-mRNA splicing.
    Proc Natl Acad Sci U S A. 1987 Dec;84(24):9094-8 PMID: 3480532
  23. Yeast mRNA splicing in vitro.
    J Biol Chem. 1985 Nov 25;260(27):14780-92 PMID: 2997224
  24. Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.
    Nucleic Acids Res. 1984 Sep 25;12(18):7035-56 PMID: 6091052
  25. Introns increase gene expression in cultured maize cells.
    Genes Dev. 1987 Dec;1(10):1183-200 PMID: 2828168
  26. Spliceosomal snRNAs.
    Annu Rev Genet. 1988;22:387-419 PMID: 2977088
  27. A catalogue of splice junction and putative branch point sequences from plant introns.
    Nucleic Acids Res. 1986 Dec 22;14(24):9549-59 PMID: 3808952
  28. Plant small nuclear RNAs. II. U6 RNA and a 4.5SI-like RNA are present in plant nuclei.
    Nucleic Acids Res. 1987 Jan 26;15(2):543-60 PMID: 2434924
  29. Different small nuclear ribonucleoprotein particles are involved in different steps of splicing complex formation.
    Cold Spring Harb Symp Quant Biol. 1987;52:287-98 PMID: 2969789
  30. Plant small nuclear RNAs. III. The complete primary and secondary structure of broad bean U2 RNA: phylogenetic and functional implications.
    Nucleic Acids Res. 1987 Feb 11;15(3):1332 PMID: 3822826
  31. Plant small nuclear RNAs. V. U4 RNA is present in broad bean plants in the form of sequence variants and is base-paired with U6 RNA.
    Nucleic Acids Res. 1988 Jun 24;16(12):5407-26 PMID: 3387237
  32. A mechanism for RNA splicing.
    Proc Natl Acad Sci U S A. 1980 Apr;77(4):1877-9 PMID: 6246511
  33. The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing.
    Cell. 1989 Aug 11;58(3):473-83 PMID: 2758463
  34. Monocot and dicot pre-mRNAs are processed with different efficiencies in transgenic tobacco.
    EMBO J. 1986 Oct;5(10):2419-25 PMID: 16453710
  35. Plant intron sequences: evidence for distinct groups of introns.
    Nucleic Acids Res. 1988 Jul 25;16(14B):7159-76 PMID: 3405760
  36. Nuclear pre-mRNA processing in plants: distinct modes of 3'-splice-site selection in plants and animals.
    Mol Cell Biol. 1988 May;8(5):2042-51 PMID: 3386632
  37. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  38. Probing the structure and function of U2 snRNP with antisense oligonucleotides made of 2'-OMe RNA.
    Cell. 1989 Jul 28;58(2):383-90 PMID: 2526684
  39. 3' end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters.
    Cell. 1986 Oct 24;47(2):259-66 PMID: 3021336
  40. U2 RNA shares a structural domain with U1, U4, and U5 RNAs.
    EMBO J. 1982;1(10):1259-65 PMID: 6202507
  41. Accurate in vitro splicing of two pre-mRNA plant introns in a HeLa cell nuclear extract.
    EMBO J. 1986 Nov;5(11):2749-58 PMID: 2431897
  42. Splicing of plant pre-mRNAs in animal systems and vice versa.
    Gene. 1987;56(2-3):253-65 PMID: 3678838
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1989-11-25
Pages
8991-9001
Language
English
Region
England
NLM ID
0411011
PMCID
PMC335108
Subset
IM
Databases
GENBANK
X16459
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com