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PMID: 24810513 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

β-Carboxysomal proteins assemble into highly organized structures in Nicotiana chloroplasts.

The Plant journal : for cell and molecular biology ·Vol. 79 ·No. 1 ·2014-07-00 ·Pages 1-12

Lin MT, Occhialini A, Andralojc PJ, Devonshire J, Hines KM, Parry MA, Hanson MR

Abstract

The photosynthetic efficiency of C3 plants suffers from the reaction of ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) with O2 instead of CO2 , leading to the costly process of photorespiration. Increasing the concentration of CO2 around Rubisco is a strategy used by photosynthetic prokaryotes such as cyanobacteria for more efficient incorporation of inorganic carbon. Engineering the cyanobacterial CO2 -concentrating mechanism, the carboxysome, into chloroplasts is an approach to enhance photosynthesis or to compartmentalize other biochemical reactions to confer new capabilities on transgenic plants. We have chosen to explore the possibility of producing β-carboxysomes from Synechococcus elongatus PCC7942, a model freshwater cyanobacterium. Using the agroinfiltration technique, we have transiently expressed multiple β-carboxysomal proteins (CcmK2, CcmM, CcmL, CcmO and CcmN) in Nicotiana benthamiana with fusions that target these proteins into chloroplasts, and that provide fluorescent labels for visualizing the resultant structures. By confocal and electron microscopic analysis, we have observed that the shell proteins of the β-carboxysome are able to assemble in plant chloroplasts into highly organized assemblies resembling empty microcompartments. We demonstrate that a foreign protein can be targeted with a 17-amino-acid CcmN peptide to the shell proteins inside chloroplasts. Our experiments establish the feasibility of introducing carboxysomes into chloroplasts for the potential compartmentalization of Rubisco or other proteins.

Keywords
CO2 concentration mechanism Nicotiana benthamiana bacterial microcompartment chloroplast engineering photosynthesis synthetic biology β-carboxysome
MeSH Terms
Arabidopsis/genetics Bacterial Proteins/genetics,metabolism Carbon Cycle Carbon Dioxide/metabolism Chloroplast Proteins/genetics,metabolism Chloroplasts/metabolism,ultrastructure Feasibility Studies Gene Expression Genes, Reporter Immunohistochemistry Mesophyll Cells Microscopy, Electron, Transmission Microscopy, Fluorescence Organelles/metabolism,ultrastructure Plant Leaves Plants, Genetically Modified Protein Sorting Signals/genetics Protein Transport Synechococcus/genetics,metabolism Tobacco/genetics,metabolism,ultrastructure
Chemicals
Bacterial Proteins Chloroplast Proteins Protein Sorting Signals chloroplast transit peptides Carbon Dioxide
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Lin Myat T
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853, USA.
Occhialini Alessandro
Andralojc P John
Devonshire Jean
Hines Kevin M
Parry Martin A J
Hanson Maureen R
References (45)
45 references, click to expand
  1. Dual promoter of Agrobacterium tumefaciens mannopine synthase genes is regulated by plant growth hormones.
    Proc Natl Acad Sci U S A. 1989 May;86(9):3219-23 PMID: 16594033
  2. Self-assembling, protein-based intracellular bacterial organelles: emerging vehicles for encapsulating, targeting and delivering therapeutical cargoes.
    Microb Cell Fact. 2011 Nov 03;10:92 PMID: 22046962
  3. Cyanobacterial-based approaches to improving photosynthesis in plants.
    J Exp Bot. 2013 Jan;64(3):787-98 PMID: 23095996
  4. Comparative analysis of carboxysome shell proteins.
    Photosynth Res. 2011 Sep;109(1-3):21-32 PMID: 21279737
  5. Functions, compositions, and evolution of the two types of carboxysomes: polyhedral microcompartments that facilitate CO2 fixation in cyanobacteria and some proteobacteria.
    Microbiol Mol Biol Rev. 2013 Sep;77(3):357-79 PMID: 24006469
  6. Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants.
    J Exp Bot. 2008;59(7):1441-61 PMID: 17578868
  7. Protein-based organelles in bacteria: carboxysomes and related microcompartments.
    Nat Rev Microbiol. 2008 Sep;6(9):681-91 PMID: 18679172
  8. Intact carboxysomes in a cyanobacterial cell visualized by hilbert differential contrast transmission electron microscopy.
    J Bacteriol. 2006 Jan;188(2):805-8 PMID: 16385071
  9. Can the cyanobacterial carbon-concentrating mechanism increase photosynthesis in crop species? A theoretical analysis.
    Plant Physiol. 2014 Apr;164(4):2247-61 PMID: 24550242
  10. The bacterial carbon-fixing organelle is formed by shell envelopment of preassembled cargo.
    PLoS One. 2013 Sep 04;8(9):e76127 PMID: 24023971
  11. An improved procedure for low-temperature embedding of high-pressure frozen and freeze-substituted plant tissues resulting in excellent structural preservation and contrast.
    J Microsc. 2012 Jul;247(1):43-7 PMID: 22360578
  12. Structural determinants of the outer shell of β-carboxysomes in Synechococcus elongatus PCC 7942: roles for CcmK2, K3-K4, CcmO, and CcmL.
    PLoS One. 2012;7(8):e43871 PMID: 22928045
  13. The cyanobacterial CCM as a source of genes for improving photosynthetic CO2 fixation in crop species.
    J Exp Bot. 2013 Jan;64(3):753-68 PMID: 23028015
  14. Exchange of protein molecules through connections between higher plant plastids.
    Science. 1997 Jun 27;276(5321):2039-42 PMID: 9197266
  15. The N-terminal region of the medium subunit (PduD) packages adenosylcobalamin-dependent diol dehydratase (PduCDE) into the Pdu microcompartment.
    J Bacteriol. 2011 Oct;193(20):5623-8 PMID: 21821773
  16. Insights from multiple structures of the shell proteins from the beta-carboxysome.
    Protein Sci. 2009 Jan;18(1):108-20 PMID: 19177356
  17. Analysis of a genomic DNA region from the cyanobacterium Synechococcus sp. strain PCC7942 involved in carboxysome assembly and function.
    J Bacteriol. 1993 May;175(10):2871-9 PMID: 8491708
  18. The pentameric vertex proteins are necessary for the icosahedral carboxysome shell to function as a CO2 leakage barrier.
    PLoS One. 2009 Oct 21;4(10):e7521 PMID: 19844578
  19. Halothiobacillus neapolitanus carboxysomes sequester heterologous and chimeric RubisCO species.
    PLoS One. 2008;3(10):e3570 PMID: 18974784
  20. Biogenesis of a bacterial organelle: the carboxysome assembly pathway.
    Cell. 2013 Nov 21;155(5):1131-40 PMID: 24267892
  21. Bacterial microcompartments moving into a synthetic biological world.
    J Biotechnol. 2013 Jan 20;163(2):273-9 PMID: 22982517
  22. An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus.
    Plant J. 2003 Mar;33(5):949-56 PMID: 12609035
  23. Microcompartments in prokaryotes: carboxysomes and related polyhedra.
    Appl Environ Microbiol. 2001 Dec;67(12):5351-61 PMID: 11722879
  24. Short N-terminal sequences package proteins into bacterial microcompartments.
    Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7509-14 PMID: 20308536
  25. Atomic-level models of the bacterial carboxysome shell.
    Science. 2008 Feb 22;319(5866):1083-6 PMID: 18292340
  26. Biochemical and structural insights into bacterial organelle form and biogenesis.
    J Biol Chem. 2008 May 23;283(21):14366-75 PMID: 18332146
  27. Interactions and structural variability of β-carboxysomal shell protein CcmL.
    Photosynth Res. 2014 Sep;121(2-3):125-33 PMID: 24504539
  28. Transmission electron microscopy (TEM) of plant tissues.
    Cold Spring Harb Protoc. 2010 Jul 01;2010(7):pdb.prot4958 PMID: 20647351
  29. Modularity of a carbon-fixing protein organelle.
    Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):478-83 PMID: 22184212
  30. Protein structures forming the shell of primitive bacterial organelles.
    Science. 2005 Aug 5;309(5736):936-8 PMID: 16081736
  31. Synthesis of empty bacterial microcompartments, directed organelle protein incorporation, and evidence of filament-associated organelle movement.
    Mol Cell. 2010 Apr 23;38(2):305-15 PMID: 20417607
  32. Polyhedral organelles compartmenting bacterial metabolic processes.
    Appl Microbiol Biotechnol. 2006 May;70(5):517-25 PMID: 16525780
  33. Engineered protein nano-compartments for targeted enzyme localization.
    PLoS One. 2012;7(3):e33342 PMID: 22428024
  34. Elucidating essential role of conserved carboxysomal protein CcmN reveals common feature of bacterial microcompartment assembly.
    J Biol Chem. 2012 May 18;287(21):17729-17736 PMID: 22461622
  35. The structure of CcmP, a tandem bacterial microcompartment domain protein from the β-carboxysome, forms a subcompartment within a microcompartment.
    J Biol Chem. 2013 May 31;288(22):16055-63 PMID: 23572529
  36. Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension.
    Gene. 1989 Apr 15;77(1):61-8 PMID: 2744488
  37. The protein shells of bacterial microcompartment organelles.
    Curr Opin Struct Biol. 2011 Apr;21(2):223-31 PMID: 21315581
  38. A dodecameric CcmK2 structure suggests β-carboxysomal shell facets have a double-layered organization.
    Structure. 2012 Aug 8;20(8):1353-62 PMID: 22748766
  39. Functional cyanobacterial beta-carboxysomes have an absolute requirement for both long and short forms of the CcmM protein.
    Plant Physiol. 2010 May;153(1):285-93 PMID: 20304968
  40. Interactions between the termini of lumen enzymes and shell proteins mediate enzyme encapsulation into bacterial microcompartments.
    Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14995-5000 PMID: 22927404
  41. Advancing our understanding and capacity to engineer nature's CO2-sequestering enzyme, Rubisco.
    Plant Physiol. 2011 Jan;155(1):27-35 PMID: 20974895
  42. Analysis of the subcellular localization, function, and proteolytic control of the Arabidopsis cyclin-dependent kinase inhibitor ICK1/KRP1.
    Plant Physiol. 2006 Aug;141(4):1293-305 PMID: 16766674
  43. A ubiquitin-10 promoter-based vector set for fluorescent protein tagging facilitates temporal stability and native protein distribution in transient and stable expression studies.
    Plant J. 2010 Oct;64(2):355-65 PMID: 20735773
  44. A multiprotein bicarbonate dehydration complex essential to carboxysome function in cyanobacteria.
    J Bacteriol. 2008 Feb;190(3):936-45 PMID: 17993516
  45. Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants.
    Nat Protoc. 2006;1(4):2019-25 PMID: 17487191
Article Info
Journal
The Plant journal : for cell and molecular biology
Abbr.
Plant J
ISSN
1365-313X
Published
2014-07-00
Epub
2014-00-09
Pages
1-12
Language
English
Region
England
NLM ID
9207397
PMCID
PMC4080790
Subset
IM
Grants
NIGMS NIH HHS · F32 GM103019 · United States
Biotechnology and Biological Sciences Research Council · BB/I024488/1 · United Kingdom
NIGMS NIH HHS · F32GM103019 · United States
NIGMS NIH HHS · T32 GM007273 · United States
NCRR NIH HHS · S10 RR025502 · United States
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